Hb_086607_010

Information

Type -
Description -
Location Contig86607: 218-844
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086607_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_012305_090 0.1702475328 - - hypothetical protein VITISV_018166 [Vitis vinifera]
3 Hb_005396_060 0.2220119785 - - -
4 Hb_024411_010 0.2452872907 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_001282_030 0.2455430649 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
6 Hb_002729_020 0.2495862336 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
7 Hb_000711_020 0.2564091033 - - major allergen Pru ar 1-like [Jatropha curcas]
8 Hb_012092_080 0.2646119155 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
9 Hb_001341_020 0.2660575688 - - Uncharacterised protein [Bordetella pertussis]
10 Hb_002014_070 0.2672712746 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_053998_020 0.2721591931 - - -
12 Hb_001446_010 0.2787860752 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_115656_010 0.2788587969 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
14 Hb_006569_050 0.279550342 - - -
15 Hb_057451_040 0.2805310499 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_014548_030 0.2850914784 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
17 Hb_007520_070 0.2863733953 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
18 Hb_002791_020 0.286458088 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
19 Hb_173808_010 0.2872147512 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
20 Hb_001229_030 0.2929742232 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]

Gene co-expression network

sample Hb_086607_010 Hb_086607_010 Hb_012305_090 Hb_012305_090 Hb_086607_010--Hb_012305_090 Hb_005396_060 Hb_005396_060 Hb_086607_010--Hb_005396_060 Hb_024411_010 Hb_024411_010 Hb_086607_010--Hb_024411_010 Hb_001282_030 Hb_001282_030 Hb_086607_010--Hb_001282_030 Hb_002729_020 Hb_002729_020 Hb_086607_010--Hb_002729_020 Hb_000711_020 Hb_000711_020 Hb_086607_010--Hb_000711_020 Hb_012305_090--Hb_005396_060 Hb_014548_030 Hb_014548_030 Hb_012305_090--Hb_014548_030 Hb_001341_020 Hb_001341_020 Hb_012305_090--Hb_001341_020 Hb_012305_090--Hb_000711_020 Hb_115656_010 Hb_115656_010 Hb_012305_090--Hb_115656_010 Hb_005396_060--Hb_001341_020 Hb_000022_140 Hb_000022_140 Hb_005396_060--Hb_000022_140 Hb_003944_020 Hb_003944_020 Hb_005396_060--Hb_003944_020 Hb_006452_240 Hb_006452_240 Hb_005396_060--Hb_006452_240 Hb_002226_050 Hb_002226_050 Hb_005396_060--Hb_002226_050 Hb_013080_010 Hb_013080_010 Hb_024411_010--Hb_013080_010 Hb_053079_010 Hb_053079_010 Hb_024411_010--Hb_053079_010 Hb_002687_070 Hb_002687_070 Hb_024411_010--Hb_002687_070 Hb_000518_040 Hb_000518_040 Hb_024411_010--Hb_000518_040 Hb_171685_020 Hb_171685_020 Hb_024411_010--Hb_171685_020 Hb_001282_030--Hb_115656_010 Hb_012092_080 Hb_012092_080 Hb_001282_030--Hb_012092_080 Hb_001523_030 Hb_001523_030 Hb_001282_030--Hb_001523_030 Hb_057451_040 Hb_057451_040 Hb_001282_030--Hb_057451_040 Hb_004212_040 Hb_004212_040 Hb_001282_030--Hb_004212_040 Hb_005016_110 Hb_005016_110 Hb_002729_020--Hb_005016_110 Hb_000832_010 Hb_000832_010 Hb_002729_020--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002729_020--Hb_001871_030 Hb_000136_080 Hb_000136_080 Hb_002729_020--Hb_000136_080 Hb_002815_040 Hb_002815_040 Hb_002729_020--Hb_002815_040 Hb_114121_010 Hb_114121_010 Hb_002729_020--Hb_114121_010 Hb_000711_020--Hb_014548_030 Hb_006569_050 Hb_006569_050 Hb_000711_020--Hb_006569_050 Hb_049275_010 Hb_049275_010 Hb_000711_020--Hb_049275_010 Hb_001446_010 Hb_001446_010 Hb_000711_020--Hb_001446_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517315 0.248393 0.0792697 0 0 0.180359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.162746 0.196047 0.719144

CAGE analysis