Hb_000022_140

Information

Type -
Description -
Location Contig22: 237192-239327
Sequence    

Annotation

kegg
ID fve:101296739
description uncharacterized protein LOC101296739
nr
ID EYU33119.1
description hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022QZM9
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009920mg PE=4 SV=1
Gene Ontology
ID GO:0008270
description swim zinc finger family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22615: 236253-260587 , PASA_asmbl_22617: 237196-260343 , PASA_asmbl_22618: 238660-239204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_140 0.0 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
2 Hb_000529_140 0.1508304313 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000404_040 0.1596337384 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005523_010 0.1662187525 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
5 Hb_000739_210 0.1705660574 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
6 Hb_003186_040 0.1718986344 - - PREDICTED: protein DENND6A [Jatropha curcas]
7 Hb_001341_020 0.1764289254 - - Uncharacterised protein [Bordetella pertussis]
8 Hb_005396_060 0.1776367815 - - -
9 Hb_000922_260 0.1787818475 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
10 Hb_001341_010 0.1834265833 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
11 Hb_000668_110 0.1835275468 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
12 Hb_008511_140 0.1838472336 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
13 Hb_000390_030 0.1870599508 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
14 Hb_000940_170 0.1887659755 - - hypothetical protein VITISV_029834 [Vitis vinifera]
15 Hb_000256_110 0.1895437891 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
16 Hb_000589_380 0.1903105925 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
17 Hb_052946_010 0.1918436608 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
18 Hb_001405_080 0.1919373161 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
19 Hb_001223_010 0.1928519277 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
20 Hb_000640_260 0.1955656623 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000022_140 Hb_000022_140 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000404_040 Hb_000404_040 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_003186_040 Hb_003186_040 Hb_000022_140--Hb_003186_040 Hb_001341_020 Hb_001341_020 Hb_000022_140--Hb_001341_020 Hb_008511_140 Hb_008511_140 Hb_000529_140--Hb_008511_140 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_000529_140--Hb_005523_010 Hb_010757_030 Hb_010757_030 Hb_000529_140--Hb_010757_030 Hb_000495_080 Hb_000495_080 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_052946_010 Hb_052946_010 Hb_000404_040--Hb_052946_010 Hb_001408_120 Hb_001408_120 Hb_000404_040--Hb_001408_120 Hb_013399_090 Hb_013399_090 Hb_000404_040--Hb_013399_090 Hb_001341_010 Hb_001341_010 Hb_000404_040--Hb_001341_010 Hb_000025_500 Hb_000025_500 Hb_000404_040--Hb_000025_500 Hb_000731_290 Hb_000731_290 Hb_000404_040--Hb_000731_290 Hb_011616_020 Hb_011616_020 Hb_005523_010--Hb_011616_020 Hb_005250_030 Hb_005250_030 Hb_005523_010--Hb_005250_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_013459_010 Hb_013459_010 Hb_005523_010--Hb_013459_010 Hb_000256_110 Hb_000256_110 Hb_000739_210--Hb_000256_110 Hb_000896_050 Hb_000896_050 Hb_000739_210--Hb_000896_050 Hb_000008_350 Hb_000008_350 Hb_000739_210--Hb_000008_350 Hb_000062_510 Hb_000062_510 Hb_000739_210--Hb_000062_510 Hb_010288_060 Hb_010288_060 Hb_000739_210--Hb_010288_060 Hb_004339_030 Hb_004339_030 Hb_000739_210--Hb_004339_030 Hb_001085_210 Hb_001085_210 Hb_003186_040--Hb_001085_210 Hb_008803_040 Hb_008803_040 Hb_003186_040--Hb_008803_040 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_002226_050 Hb_002226_050 Hb_003186_040--Hb_002226_050 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_001341_020--Hb_002226_050 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0364 2.4346 2.40678 3.26291 0.813055 3.59039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.603593 0.663956 4.06866 8.43002 12.4052

CAGE analysis