Hb_008803_040

Information

Type -
Description -
Location Contig8803: 68547-71315
Sequence    

Annotation

kegg
ID bvg:104897694
description uncharacterized LOC104897694
nr
ID XP_011071708.1
description PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID M1DNA9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400041314 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61418: 68779-70024 , PASA_asmbl_61420: 70364-70637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008803_040 0.0 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
2 Hb_000705_250 0.1661578503 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
3 Hb_003186_040 0.1786503665 - - PREDICTED: protein DENND6A [Jatropha curcas]
4 Hb_026698_030 0.1866868829 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
5 Hb_000404_040 0.2015666297 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000022_140 0.2092382546 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
7 Hb_173808_010 0.2113343624 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
8 Hb_000640_260 0.2114179663 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
9 Hb_002791_020 0.2165500377 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
10 Hb_000700_080 0.2218882565 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006569_050 0.2238087068 - - -
12 Hb_002360_030 0.2256106566 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
13 Hb_000529_140 0.2258793104 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012404_080 0.2264304569 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
15 Hb_000078_080 0.2286453478 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
16 Hb_000495_080 0.2290260671 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
17 Hb_026314_030 0.2292137543 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
18 Hb_001863_020 0.2301330175 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
19 Hb_004917_010 0.2309985916 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
20 Hb_009615_120 0.2310140168 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_008803_040 Hb_008803_040 Hb_000705_250 Hb_000705_250 Hb_008803_040--Hb_000705_250 Hb_003186_040 Hb_003186_040 Hb_008803_040--Hb_003186_040 Hb_026698_030 Hb_026698_030 Hb_008803_040--Hb_026698_030 Hb_000404_040 Hb_000404_040 Hb_008803_040--Hb_000404_040 Hb_000022_140 Hb_000022_140 Hb_008803_040--Hb_000022_140 Hb_173808_010 Hb_173808_010 Hb_008803_040--Hb_173808_010 Hb_000318_130 Hb_000318_130 Hb_000705_250--Hb_000318_130 Hb_004218_190 Hb_004218_190 Hb_000705_250--Hb_004218_190 Hb_009486_040 Hb_009486_040 Hb_000705_250--Hb_009486_040 Hb_005511_150 Hb_005511_150 Hb_000705_250--Hb_005511_150 Hb_003025_140 Hb_003025_140 Hb_000705_250--Hb_003025_140 Hb_007527_010 Hb_007527_010 Hb_000705_250--Hb_007527_010 Hb_003186_040--Hb_000022_140 Hb_001085_210 Hb_001085_210 Hb_003186_040--Hb_001085_210 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_002226_050 Hb_002226_050 Hb_003186_040--Hb_002226_050 Hb_002943_010 Hb_002943_010 Hb_026698_030--Hb_002943_010 Hb_008226_030 Hb_008226_030 Hb_026698_030--Hb_008226_030 Hb_026698_030--Hb_000404_040 Hb_032718_010 Hb_032718_010 Hb_026698_030--Hb_032718_010 Hb_004574_040 Hb_004574_040 Hb_026698_030--Hb_004574_040 Hb_052946_010 Hb_052946_010 Hb_000404_040--Hb_052946_010 Hb_001408_120 Hb_001408_120 Hb_000404_040--Hb_001408_120 Hb_013399_090 Hb_013399_090 Hb_000404_040--Hb_013399_090 Hb_001341_010 Hb_001341_010 Hb_000404_040--Hb_001341_010 Hb_000025_500 Hb_000025_500 Hb_000404_040--Hb_000025_500 Hb_000731_290 Hb_000731_290 Hb_000404_040--Hb_000731_290 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_001341_020 Hb_001341_020 Hb_000022_140--Hb_001341_020 Hb_001080_030 Hb_001080_030 Hb_173808_010--Hb_001080_030 Hb_000640_260 Hb_000640_260 Hb_173808_010--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_173808_010--Hb_003029_140 Hb_173808_010--Hb_052946_010 Hb_173808_010--Hb_000731_290 Hb_078477_060 Hb_078477_060 Hb_173808_010--Hb_078477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0707263 0.284534 0.269765 0.247814 0 0.133389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0721536 0.0567302 0.612781 0.345056 1.0196

CAGE analysis