Hb_004574_040

Information

Type -
Description -
Location Contig4574: 37023-43156
Sequence    

Annotation

kegg
ID cic:CICLE_v10002149mg
description hypothetical protein
nr
ID XP_012090731.1
description PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID A0A067LKD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01269 PE=4 SV=1
Gene Ontology
ID GO:0005488
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004574_040 0.0 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
2 Hb_026698_020 0.1253123045 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_001514_240 0.1492201661 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
4 Hb_000340_220 0.1544163207 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000417_410 0.1546708155 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
6 Hb_003581_130 0.1549244728 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_002343_010 0.1554597002 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_001124_140 0.1571694838 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
9 Hb_001242_190 0.1577208161 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_005588_120 0.1577546349 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009449_100 0.160493859 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
12 Hb_029584_160 0.1610314269 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
13 Hb_000369_080 0.1623229364 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
14 Hb_000340_360 0.1649294099 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
15 Hb_001269_370 0.1671188086 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
16 Hb_000165_100 0.1672189702 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
17 Hb_001699_170 0.1685158868 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005162_140 0.1705878047 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
19 Hb_132840_030 0.1712814781 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
20 Hb_000665_200 0.1712826652 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_004574_040 Hb_004574_040 Hb_026698_020 Hb_026698_020 Hb_004574_040--Hb_026698_020 Hb_001514_240 Hb_001514_240 Hb_004574_040--Hb_001514_240 Hb_000340_220 Hb_000340_220 Hb_004574_040--Hb_000340_220 Hb_000417_410 Hb_000417_410 Hb_004574_040--Hb_000417_410 Hb_003581_130 Hb_003581_130 Hb_004574_040--Hb_003581_130 Hb_002343_010 Hb_002343_010 Hb_004574_040--Hb_002343_010 Hb_026698_020--Hb_001514_240 Hb_026698_020--Hb_000417_410 Hb_009449_100 Hb_009449_100 Hb_026698_020--Hb_009449_100 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_001514_240--Hb_009449_100 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_000804_020 Hb_000804_020 Hb_000340_220--Hb_000804_020 Hb_000340_220--Hb_003581_130 Hb_005588_120 Hb_005588_120 Hb_000340_220--Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_000340_220--Hb_004129_010 Hb_001865_100 Hb_001865_100 Hb_000340_220--Hb_001865_100 Hb_000007_410 Hb_000007_410 Hb_000340_220--Hb_000007_410 Hb_000365_220 Hb_000365_220 Hb_000417_410--Hb_000365_220 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_000522_010 Hb_000522_010 Hb_000417_410--Hb_000522_010 Hb_000015_200 Hb_000015_200 Hb_003581_130--Hb_000015_200 Hb_000452_030 Hb_000452_030 Hb_003581_130--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_003581_130--Hb_000015_090 Hb_002349_030 Hb_002349_030 Hb_003581_130--Hb_002349_030 Hb_000369_080 Hb_000369_080 Hb_003581_130--Hb_000369_080 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001616_110 Hb_001616_110 Hb_002343_010--Hb_001616_110 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0195738 0.286748 0.186993 0.153265 0 0.0273195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0274192 0.0323656 0.082622 0.111221 0.253442

CAGE analysis