Hb_001616_110

Information

Type -
Description -
Location Contig1616: 135185-141514
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24680g
description POPTRDRAFT_709976; RPM1-interacting protein 4
nr
ID XP_012085074.1
description PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID A0A067JR54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17520 PE=4 SV=1
Gene Ontology
ID GO:0019897
description rpm1-interacting protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14502: 135259-141372 , PASA_asmbl_14503: 140188-140427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_110 0.0 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
2 Hb_027654_080 0.1360574892 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
3 Hb_002343_010 0.1458360586 - - amino acid binding protein, putative [Ricinus communis]
4 Hb_002766_050 0.1579926482 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
5 Hb_000340_290 0.1660748916 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
6 Hb_000920_130 0.169142386 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001959_120 0.1705683007 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
8 Hb_000700_080 0.1716943237 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010891_020 0.1731414389 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_001054_070 0.1734604871 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
11 Hb_001956_060 0.1764185634 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
12 Hb_006816_480 0.1782134715 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
13 Hb_012340_060 0.179376712 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004208_140 0.1811929095 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
15 Hb_000092_120 0.1818643231 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
16 Hb_001269_370 0.1843492676 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
17 Hb_025708_020 0.188278984 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_001486_200 0.1884906272 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
19 Hb_004837_150 0.1897865546 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
20 Hb_168319_010 0.1898430536 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001616_110 Hb_001616_110 Hb_027654_080 Hb_027654_080 Hb_001616_110--Hb_027654_080 Hb_002343_010 Hb_002343_010 Hb_001616_110--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_001616_110--Hb_002766_050 Hb_000340_290 Hb_000340_290 Hb_001616_110--Hb_000340_290 Hb_000920_130 Hb_000920_130 Hb_001616_110--Hb_000920_130 Hb_001959_120 Hb_001959_120 Hb_001616_110--Hb_001959_120 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020 Hb_004208_140 Hb_004208_140 Hb_002766_050--Hb_004208_140 Hb_002766_050--Hb_010891_020 Hb_002766_050--Hb_001054_070 Hb_002766_050--Hb_027654_080 Hb_000123_240 Hb_000123_240 Hb_002766_050--Hb_000123_240 Hb_007012_040 Hb_007012_040 Hb_000340_290--Hb_007012_040 Hb_014006_010 Hb_014006_010 Hb_000340_290--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000340_290--Hb_003124_270 Hb_000805_190 Hb_000805_190 Hb_000340_290--Hb_000805_190 Hb_001956_060 Hb_001956_060 Hb_000340_290--Hb_001956_060 Hb_000154_130 Hb_000154_130 Hb_000340_290--Hb_000154_130 Hb_000920_130--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_000920_130--Hb_002259_170 Hb_000086_630 Hb_000086_630 Hb_000920_130--Hb_000086_630 Hb_000506_110 Hb_000506_110 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060 Hb_000120_160 Hb_000120_160 Hb_001959_120--Hb_000120_160 Hb_001486_200 Hb_001486_200 Hb_001959_120--Hb_001486_200 Hb_000672_150 Hb_000672_150 Hb_001959_120--Hb_000672_150 Hb_000084_220 Hb_000084_220 Hb_001959_120--Hb_000084_220 Hb_011716_050 Hb_011716_050 Hb_001959_120--Hb_011716_050 Hb_002876_250 Hb_002876_250 Hb_001959_120--Hb_002876_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408732 14.9829 6.23814 6.68908 0.343888 0.866293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15332 7.19977 6.69013 7.26045 10.731

CAGE analysis