Hb_000123_240

Information

Type -
Description -
Location Contig123: 213644-218218
Sequence    

Annotation

kegg
ID rcu:RCOM_0190610
description RNA binding protein, putative
nr
ID XP_012081556.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q96MB7
description Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
trembl
ID A0A067K0W6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18441 PE=4 SV=1
Gene Ontology
ID GO:0043565
description nuclease harbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_240 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_006120_150 0.1305873323 - - invertase [Hevea brasiliensis]
3 Hb_001247_020 0.1333904302 - - galactinol synthase family protein [Populus trichocarpa]
4 Hb_025708_010 0.1614434666 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
5 Hb_025708_020 0.1774400736 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_002343_010 0.1785363475 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_002766_050 0.1824869475 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
8 Hb_000020_070 0.1834227089 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
9 Hb_001898_130 0.1834587071 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000123_220 0.1864100371 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
11 Hb_004574_040 0.1871117705 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
12 Hb_010891_020 0.1878997685 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_001269_370 0.1883785761 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
14 Hb_000235_070 0.1885434295 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
15 Hb_061256_010 0.1903524109 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
16 Hb_012804_020 0.1920533462 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
17 Hb_012799_150 0.1950818571 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
18 Hb_000452_030 0.1968983604 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
19 Hb_004208_140 0.1979041359 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
20 Hb_012423_060 0.1980263899 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_240 Hb_000123_240 Hb_006120_150 Hb_006120_150 Hb_000123_240--Hb_006120_150 Hb_001247_020 Hb_001247_020 Hb_000123_240--Hb_001247_020 Hb_025708_010 Hb_025708_010 Hb_000123_240--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_000123_240--Hb_025708_020 Hb_002343_010 Hb_002343_010 Hb_000123_240--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_000123_240--Hb_002766_050 Hb_012545_030 Hb_012545_030 Hb_006120_150--Hb_012545_030 Hb_010891_020 Hb_010891_020 Hb_006120_150--Hb_010891_020 Hb_005701_110 Hb_005701_110 Hb_006120_150--Hb_005701_110 Hb_002042_170 Hb_002042_170 Hb_006120_150--Hb_002042_170 Hb_004208_140 Hb_004208_140 Hb_006120_150--Hb_004208_140 Hb_000020_070 Hb_000020_070 Hb_001247_020--Hb_000020_070 Hb_005080_020 Hb_005080_020 Hb_001247_020--Hb_005080_020 Hb_048476_040 Hb_048476_040 Hb_001247_020--Hb_048476_040 Hb_007218_060 Hb_007218_060 Hb_001247_020--Hb_007218_060 Hb_012366_050 Hb_012366_050 Hb_001247_020--Hb_012366_050 Hb_025708_010--Hb_025708_020 Hb_168319_010 Hb_168319_010 Hb_025708_010--Hb_168319_010 Hb_012340_060 Hb_012340_060 Hb_025708_010--Hb_012340_060 Hb_000123_220 Hb_000123_220 Hb_025708_010--Hb_000123_220 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_000226_080 Hb_000226_080 Hb_025708_020--Hb_000226_080 Hb_025708_020--Hb_012340_060 Hb_025708_020--Hb_168319_010 Hb_023344_060 Hb_023344_060 Hb_025708_020--Hb_023344_060 Hb_000656_390 Hb_000656_390 Hb_025708_020--Hb_000656_390 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001616_110 Hb_001616_110 Hb_002343_010--Hb_001616_110 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020 Hb_002766_050--Hb_004208_140 Hb_002766_050--Hb_010891_020 Hb_002766_050--Hb_001616_110 Hb_002766_050--Hb_001054_070 Hb_027654_080 Hb_027654_080 Hb_002766_050--Hb_027654_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.943083 6.18749 6.76257 2.65984 0.094787 0.302253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.864985 1.24255 4.63744 2.40306 3.80904

CAGE analysis