Hb_000920_130

Information

Type -
Description -
Location Contig920: 73101-76414
Sequence    

Annotation

kegg
ID rcu:RCOM_1453050
description hypothetical protein
nr
ID XP_002513084.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFX2
description U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1
trembl
ID B9RGD2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453050 PE=4 SV=1
Gene Ontology
ID GO:0016874
description u-box domain-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62391: 73806-74116 , PASA_asmbl_62392: 76255-76407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001269_370 0.1188986747 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
3 Hb_002259_170 0.1345144611 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
4 Hb_000086_630 0.1361262008 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
5 Hb_000506_110 0.1383583041 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
6 Hb_000270_120 0.1404605223 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
7 Hb_001571_060 0.1454015805 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
8 Hb_000000_230 0.1487208008 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
9 Hb_000103_390 0.1504078029 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
10 Hb_001541_070 0.1510468133 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
11 Hb_001511_090 0.1524616523 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
12 Hb_002078_270 0.1533836914 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
13 Hb_000035_350 0.1554065743 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_001723_060 0.1589514456 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
15 Hb_005227_040 0.1590883164 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
16 Hb_000340_040 0.1596261819 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
17 Hb_002542_110 0.1600404091 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
18 Hb_000001_130 0.1608285932 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_001478_010 0.1621797629 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
20 Hb_004306_120 0.1624216453 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000920_130 Hb_000920_130 Hb_001269_370 Hb_001269_370 Hb_000920_130--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_000920_130--Hb_002259_170 Hb_000086_630 Hb_000086_630 Hb_000920_130--Hb_000086_630 Hb_000506_110 Hb_000506_110 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060 Hb_001269_370--Hb_002259_170 Hb_001269_370--Hb_000506_110 Hb_001511_090 Hb_001511_090 Hb_001269_370--Hb_001511_090 Hb_000452_030 Hb_000452_030 Hb_001269_370--Hb_000452_030 Hb_001307_100 Hb_001307_100 Hb_001269_370--Hb_001307_100 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_002259_170--Hb_000452_030 Hb_002259_170--Hb_001511_090 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_000086_630--Hb_000270_120 Hb_001105_110 Hb_001105_110 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000086_630--Hb_002542_110 Hb_003462_180 Hb_003462_180 Hb_000506_110--Hb_003462_180 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_000270_120--Hb_002542_110 Hb_005015_110 Hb_005015_110 Hb_001571_060--Hb_005015_110 Hb_180378_010 Hb_180378_010 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_002486_080 Hb_002486_080 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18609 4.95574 2.88002 1.57253 0.243819 0.826729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88743 2.67605 2.2463 2.98535 5.52196

CAGE analysis