Hb_000804_020

Information

Type -
Description -
Location Contig804: 29414-45002
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15170g
description POPTRDRAFT_246575; hypothetical protein
nr
ID XP_012089852.1
description PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
swissprot
ID P49608
description Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1
trembl
ID A0A067JFR1
description Aconitate hydratase OS=Jatropha curcas GN=JCGZ_01813 PE=3 SV=1
Gene Ontology
ID GO:0005618
description aconitate cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58933: 29449-44998
cDNA
(Sanger)
(ID:Location)		 026_C14.ab1: 44888-44998 , 033_J01.ab1: 44888-44998

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000804_020 0.0 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
2 Hb_000340_220 0.0866849411 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007416_110 0.1161667672 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
4 Hb_003025_030 0.1169571355 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_001564_070 0.1218379509 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
6 Hb_000465_150 0.1244081773 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
7 Hb_009296_020 0.1245383248 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
8 Hb_003226_090 0.1246913845 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
9 Hb_005686_130 0.1254168213 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
10 Hb_001504_060 0.1256385243 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
11 Hb_000007_410 0.1260419987 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
12 Hb_004129_010 0.1271960304 - - aspartate aminotransferase, putative [Ricinus communis]
13 Hb_001117_110 0.1283287229 - - PREDICTED: dynamin-2A [Jatropha curcas]
14 Hb_000510_170 0.1290051624 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
15 Hb_001865_100 0.130056847 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
16 Hb_002811_200 0.1327385108 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
17 Hb_007229_050 0.1329377347 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
18 Hb_003581_130 0.1339188589 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000622_060 0.1363306393 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
20 Hb_005588_120 0.136509022 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000804_020 Hb_000804_020 Hb_000340_220 Hb_000340_220 Hb_000804_020--Hb_000340_220 Hb_007416_110 Hb_007416_110 Hb_000804_020--Hb_007416_110 Hb_003025_030 Hb_003025_030 Hb_000804_020--Hb_003025_030 Hb_001564_070 Hb_001564_070 Hb_000804_020--Hb_001564_070 Hb_000465_150 Hb_000465_150 Hb_000804_020--Hb_000465_150 Hb_009296_020 Hb_009296_020 Hb_000804_020--Hb_009296_020 Hb_003581_130 Hb_003581_130 Hb_000340_220--Hb_003581_130 Hb_005588_120 Hb_005588_120 Hb_000340_220--Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_000340_220--Hb_004129_010 Hb_001865_100 Hb_001865_100 Hb_000340_220--Hb_001865_100 Hb_000007_410 Hb_000007_410 Hb_000340_220--Hb_000007_410 Hb_007416_110--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_003440_020 Hb_003440_020 Hb_007416_110--Hb_003440_020 Hb_002486_080 Hb_002486_080 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130 Hb_003025_030--Hb_000465_150 Hb_124315_010 Hb_124315_010 Hb_003025_030--Hb_124315_010 Hb_003025_030--Hb_002281_020 Hb_003025_030--Hb_001564_070 Hb_003025_030--Hb_007416_110 Hb_001504_060 Hb_001504_060 Hb_001564_070--Hb_001504_060 Hb_000125_180 Hb_000125_180 Hb_001564_070--Hb_000125_180 Hb_000922_260 Hb_000922_260 Hb_001564_070--Hb_000922_260 Hb_005854_040 Hb_005854_040 Hb_001564_070--Hb_005854_040 Hb_004291_040 Hb_004291_040 Hb_001564_070--Hb_004291_040 Hb_012325_010 Hb_012325_010 Hb_001564_070--Hb_012325_010 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_000465_150--Hb_002486_080 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2179 51.2244 78.1991 65.62 7.88921 7.59403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1373 15.3323 40.7457 71.8336 84.5985

CAGE analysis