Hb_001564_070

Information

Type -
Description -
Location Contig1564: 97067-105158
Sequence    

Annotation

kegg
ID rcu:RCOM_1618490
description RNA binding protein, putative
nr
ID XP_012092931.1
description PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
swissprot
ID Q8GXN9
description G patch domain-containing protein TGH OS=Arabidopsis thaliana GN=TGH PE=2 SV=1
trembl
ID A0A067JJA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05834 PE=4 SV=1
Gene Ontology
ID GO:0003723
description g patch domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13590: 98142-98883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001564_070 0.0 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
2 Hb_001504_060 0.1016926639 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
3 Hb_000125_180 0.1064493026 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
4 Hb_000922_260 0.1077469513 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
5 Hb_005854_040 0.1103850579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004291_040 0.1124038873 - - hexokinase [Manihot esculenta]
7 Hb_012325_010 0.1125396363 - - hypothetical protein RCOM_0068670 [Ricinus communis]
8 Hb_027402_130 0.112842331 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_000007_410 0.1133529548 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
10 Hb_003440_020 0.1139775492 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_005588_100 0.1140220128 - - protein phosphatase, putative [Ricinus communis]
12 Hb_106890_010 0.1148720469 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
13 Hb_007933_040 0.1162204744 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
14 Hb_003549_050 0.1177862086 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
15 Hb_000256_160 0.1190833072 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
16 Hb_001159_020 0.1195507089 - - -
17 Hb_000465_150 0.1204073082 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
18 Hb_002811_200 0.1209642313 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
19 Hb_000804_020 0.1218379509 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
20 Hb_002232_160 0.1220107306 - - Transaminase mtnE, putative [Ricinus communis]

Gene co-expression network

sample Hb_001564_070 Hb_001564_070 Hb_001504_060 Hb_001504_060 Hb_001564_070--Hb_001504_060 Hb_000125_180 Hb_000125_180 Hb_001564_070--Hb_000125_180 Hb_000922_260 Hb_000922_260 Hb_001564_070--Hb_000922_260 Hb_005854_040 Hb_005854_040 Hb_001564_070--Hb_005854_040 Hb_004291_040 Hb_004291_040 Hb_001564_070--Hb_004291_040 Hb_012325_010 Hb_012325_010 Hb_001564_070--Hb_012325_010 Hb_001117_110 Hb_001117_110 Hb_001504_060--Hb_001117_110 Hb_000009_030 Hb_000009_030 Hb_001504_060--Hb_000009_030 Hb_000101_390 Hb_000101_390 Hb_001504_060--Hb_000101_390 Hb_106890_010 Hb_106890_010 Hb_001504_060--Hb_106890_010 Hb_005846_050 Hb_005846_050 Hb_001504_060--Hb_005846_050 Hb_160608_010 Hb_160608_010 Hb_001504_060--Hb_160608_010 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_002235_310 Hb_002235_310 Hb_000125_180--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000125_180--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_003490_050 Hb_003490_050 Hb_000922_260--Hb_003490_050 Hb_000668_110 Hb_000668_110 Hb_000922_260--Hb_000668_110 Hb_000256_110 Hb_000256_110 Hb_000922_260--Hb_000256_110 Hb_002232_490 Hb_002232_490 Hb_000922_260--Hb_002232_490 Hb_003549_050 Hb_003549_050 Hb_000922_260--Hb_003549_050 Hb_001405_080 Hb_001405_080 Hb_000922_260--Hb_001405_080 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_007317_020 Hb_007317_020 Hb_005854_040--Hb_007317_020 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020 Hb_027402_130 Hb_027402_130 Hb_004291_040--Hb_027402_130 Hb_000243_120 Hb_000243_120 Hb_004291_040--Hb_000243_120 Hb_004291_040--Hb_106890_010 Hb_004291_040--Hb_000009_030 Hb_028960_030 Hb_028960_030 Hb_004291_040--Hb_028960_030 Hb_006916_110 Hb_006916_110 Hb_012325_010--Hb_006916_110 Hb_000227_330 Hb_000227_330 Hb_012325_010--Hb_000227_330 Hb_000342_050 Hb_000342_050 Hb_012325_010--Hb_000342_050 Hb_012325_010--Hb_000125_180 Hb_000157_070 Hb_000157_070 Hb_012325_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_012325_010--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441506 1.06781 1.69663 1.41451 0.368321 0.366255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287568 0.62222 0.678332 2.51431 2.42673

CAGE analysis