Hb_000668_110

Information

Type -
Description -
Location Contig668: 82741-96432
Sequence    

Annotation

kegg
ID rcu:RCOM_1033990
description Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) (EC:6.4.1.2)
nr
ID XP_012078101.1
description PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
swissprot
ID Q38970
description Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1
trembl
ID A0A067KCI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11990 PE=4 SV=1
Gene Ontology
ID GO:0003989
description acetyl- carboxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53305: 82951-96438 , PASA_asmbl_53307: 83598-89613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_110 0.0 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
2 Hb_000922_260 0.0891804679 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
3 Hb_000256_110 0.1150869342 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
4 Hb_002026_070 0.1177805487 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
5 Hb_003490_050 0.1245980378 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
6 Hb_003549_050 0.1268862294 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
7 Hb_011853_010 0.1373997198 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
8 Hb_014497_060 0.1414061506 - - phosphofructokinase, putative [Ricinus communis]
9 Hb_000019_010 0.1416930272 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
10 Hb_000731_290 0.1450322974 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_002232_490 0.1457249435 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
12 Hb_000800_110 0.1472013885 - - NAD dehydrogenase, putative [Ricinus communis]
13 Hb_001405_080 0.1475236963 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
14 Hb_007943_150 0.1487719852 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
15 Hb_085187_010 0.1494564152 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_011360_060 0.149872668 - - glycogen phosphorylase, putative [Ricinus communis]
17 Hb_000997_290 0.1511690632 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
18 Hb_098533_010 0.1553574681 - - hypothetical protein L484_003492 [Morus notabilis]
19 Hb_000875_070 0.1569218758 - - -
20 Hb_001235_130 0.1603036173 - - -

Gene co-expression network

sample Hb_000668_110 Hb_000668_110 Hb_000922_260 Hb_000922_260 Hb_000668_110--Hb_000922_260 Hb_000256_110 Hb_000256_110 Hb_000668_110--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_000668_110--Hb_002026_070 Hb_003490_050 Hb_003490_050 Hb_000668_110--Hb_003490_050 Hb_003549_050 Hb_003549_050 Hb_000668_110--Hb_003549_050 Hb_011853_010 Hb_011853_010 Hb_000668_110--Hb_011853_010 Hb_000922_260--Hb_003490_050 Hb_000922_260--Hb_000256_110 Hb_002232_490 Hb_002232_490 Hb_000922_260--Hb_002232_490 Hb_000922_260--Hb_003549_050 Hb_001405_080 Hb_001405_080 Hb_000922_260--Hb_001405_080 Hb_000739_210 Hb_000739_210 Hb_000256_110--Hb_000739_210 Hb_014497_060 Hb_014497_060 Hb_000256_110--Hb_014497_060 Hb_000256_110--Hb_003490_050 Hb_000256_110--Hb_001405_080 Hb_002026_070--Hb_014497_060 Hb_169586_010 Hb_169586_010 Hb_002026_070--Hb_169586_010 Hb_000019_170 Hb_000019_170 Hb_002026_070--Hb_000019_170 Hb_002026_070--Hb_000922_260 Hb_000244_260 Hb_000244_260 Hb_002026_070--Hb_000244_260 Hb_002026_070--Hb_002232_490 Hb_003490_050--Hb_002232_490 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010 Hb_003549_050--Hb_001405_080 Hb_001425_010 Hb_001425_010 Hb_003549_050--Hb_001425_010 Hb_052946_010 Hb_052946_010 Hb_003549_050--Hb_052946_010 Hb_004111_030 Hb_004111_030 Hb_003549_050--Hb_004111_030 Hb_006816_010 Hb_006816_010 Hb_003549_050--Hb_006816_010 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37791 21.3697 25.8588 28.3996 10.3378 15.0663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2816 4.55452 6.14333 73.1809 75.7303

CAGE analysis