Hb_000101_390

Information

Type -
Description -
Location Contig101: 349032-354618
Sequence    

Annotation

kegg
ID rcu:RCOM_0593150
description ATP binding protein, putative
nr
ID XP_012087621.1
description PREDICTED: mucin-5B [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SLM8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0593150 PE=4 SV=1
Gene Ontology
ID GO:0010048
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00599: 349045-350596 , PASA_asmbl_00600: 350617-354310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_390 0.0 - - PREDICTED: mucin-5B [Jatropha curcas]
2 Hb_001504_060 0.0815118625 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
3 Hb_002445_030 0.0817563744 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
4 Hb_002006_150 0.0823284288 - - copine, putative [Ricinus communis]
5 Hb_008206_080 0.0827883212 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
6 Hb_006824_010 0.0828645674 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
7 Hb_002684_020 0.0836620977 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
8 Hb_012633_050 0.08570264 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002317_010 0.0875892235 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
10 Hb_002687_180 0.0884064581 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
11 Hb_005846_050 0.0885686693 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
12 Hb_027760_060 0.0890450414 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_008289_040 0.0900360003 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
14 Hb_000229_050 0.0906287501 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
15 Hb_002552_040 0.0917246377 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
16 Hb_000009_030 0.0922054153 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
17 Hb_000318_150 0.0935355766 - - RNA-binding protein Nova-1, putative [Ricinus communis]
18 Hb_007904_300 0.0939087568 - - copine, putative [Ricinus communis]
19 Hb_000976_110 0.0952118902 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
20 Hb_004837_280 0.0953069529 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_390 Hb_000101_390 Hb_001504_060 Hb_001504_060 Hb_000101_390--Hb_001504_060 Hb_002445_030 Hb_002445_030 Hb_000101_390--Hb_002445_030 Hb_002006_150 Hb_002006_150 Hb_000101_390--Hb_002006_150 Hb_008206_080 Hb_008206_080 Hb_000101_390--Hb_008206_080 Hb_006824_010 Hb_006824_010 Hb_000101_390--Hb_006824_010 Hb_002684_020 Hb_002684_020 Hb_000101_390--Hb_002684_020 Hb_001117_110 Hb_001117_110 Hb_001504_060--Hb_001117_110 Hb_000009_030 Hb_000009_030 Hb_001504_060--Hb_000009_030 Hb_106890_010 Hb_106890_010 Hb_001504_060--Hb_106890_010 Hb_005846_050 Hb_005846_050 Hb_001504_060--Hb_005846_050 Hb_160608_010 Hb_160608_010 Hb_001504_060--Hb_160608_010 Hb_000173_130 Hb_000173_130 Hb_002445_030--Hb_000173_130 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_013726_050 Hb_013726_050 Hb_002445_030--Hb_013726_050 Hb_008289_040 Hb_008289_040 Hb_002445_030--Hb_008289_040 Hb_002552_040 Hb_002552_040 Hb_002445_030--Hb_002552_040 Hb_002687_180 Hb_002687_180 Hb_002445_030--Hb_002687_180 Hb_002006_150--Hb_006824_010 Hb_000139_080 Hb_000139_080 Hb_002006_150--Hb_000139_080 Hb_000078_140 Hb_000078_140 Hb_002006_150--Hb_000078_140 Hb_015099_030 Hb_015099_030 Hb_002006_150--Hb_015099_030 Hb_002675_250 Hb_002675_250 Hb_002006_150--Hb_002675_250 Hb_000229_050 Hb_000229_050 Hb_008206_080--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_008206_080--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_008206_080--Hb_012633_050 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008304_020 Hb_008304_020 Hb_008206_080--Hb_008304_020 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_006824_010--Hb_000139_080 Hb_006189_020 Hb_006189_020 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_001269_130 Hb_001269_130 Hb_006824_010--Hb_001269_130 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48326 2.58183 4.63952 3.46144 1.13193 1.59368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51489 0.999802 1.93332 4.1564 3.54778

CAGE analysis