Hb_002232_430

Information

Type -
Description -
Location Contig2232: 348611-353453
Sequence    

Annotation

kegg
ID rcu:RCOM_0816840
description inorganic pyrophosphatase, putative (EC:3.6.1.1)
nr
ID XP_012074547.1
description PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9LXC9
description Soluble inorganic pyrophosphatase 6, chloroplastic OS=Arabidopsis thaliana GN=PPA6 PE=1 SV=1
trembl
ID A0A067KI65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09893 PE=4 SV=1
Gene Ontology
ID GO:0005737
description soluble inorganic pyrophosphatase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23140: 348547-353345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_430 0.0 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
2 Hb_006637_030 0.0925289625 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
3 Hb_001147_050 0.0972353602 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
4 Hb_000684_040 0.0986736234 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
5 Hb_000465_150 0.1001138516 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
6 Hb_005686_130 0.1014044982 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
7 Hb_000638_130 0.1050698927 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
8 Hb_002693_030 0.1061343324 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
9 Hb_001277_050 0.1062516652 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
10 Hb_000193_260 0.1076871262 - - PREDICTED: protein NEN1 [Jatropha curcas]
11 Hb_000243_260 0.1077514238 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
12 Hb_000535_050 0.1097773102 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
13 Hb_002477_290 0.109971672 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
14 Hb_001269_620 0.111795518 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
15 Hb_001269_130 0.1129813396 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
16 Hb_002534_130 0.1144780973 - - membrane associated ring finger 1,8, putative [Ricinus communis]
17 Hb_000723_230 0.1172705937 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
18 Hb_000330_090 0.1177764357 - - ornithine carbamoyltransferase, putative [Ricinus communis]
19 Hb_000227_160 0.1186668064 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
20 Hb_010872_050 0.1188256199 - - hypothetical protein B456_007G078100 [Gossypium raimondii]

Gene co-expression network

sample Hb_002232_430 Hb_002232_430 Hb_006637_030 Hb_006637_030 Hb_002232_430--Hb_006637_030 Hb_001147_050 Hb_001147_050 Hb_002232_430--Hb_001147_050 Hb_000684_040 Hb_000684_040 Hb_002232_430--Hb_000684_040 Hb_000465_150 Hb_000465_150 Hb_002232_430--Hb_000465_150 Hb_005686_130 Hb_005686_130 Hb_002232_430--Hb_005686_130 Hb_000638_130 Hb_000638_130 Hb_002232_430--Hb_000638_130 Hb_000723_230 Hb_000723_230 Hb_006637_030--Hb_000723_230 Hb_002693_030 Hb_002693_030 Hb_006637_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_006637_030--Hb_053709_050 Hb_026198_010 Hb_026198_010 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_005653_070 Hb_005653_070 Hb_006637_030--Hb_005653_070 Hb_001269_620 Hb_001269_620 Hb_001147_050--Hb_001269_620 Hb_000330_090 Hb_000330_090 Hb_001147_050--Hb_000330_090 Hb_001147_050--Hb_002693_030 Hb_001277_050 Hb_001277_050 Hb_001147_050--Hb_001277_050 Hb_001147_050--Hb_006637_030 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_000347_450 Hb_000347_450 Hb_000684_040--Hb_000347_450 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000684_040--Hb_000723_230 Hb_010775_040 Hb_010775_040 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290 Hb_007416_110 Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_002486_080 Hb_002486_080 Hb_000465_150--Hb_002486_080 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_005686_130--Hb_001269_620 Hb_005686_130--Hb_000638_130 Hb_005686_130--Hb_001277_050 Hb_002534_130 Hb_002534_130 Hb_005686_130--Hb_002534_130 Hb_000510_170 Hb_000510_170 Hb_005686_130--Hb_000510_170 Hb_000088_260 Hb_000088_260 Hb_005686_130--Hb_000088_260 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06158 29.8316 44.0828 35.5998 9.48096 10.3081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.892 30.2451 28.7554 47.4783 31.1758

CAGE analysis