Hb_002226_050

Information

Type -
Description -
Location Contig2226: 51223-52683
Sequence    

Annotation

kegg
ID rcu:RCOM_1095640
description heat shock protein binding protein, putative
nr
ID XP_012081280.1
description PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
swissprot
ID Q75VW3
description Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1
trembl
ID A0A067LA41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23056: 51183-52918
cDNA
(Sanger)
(ID:Location)		 049_N22.ab1: 51183-52095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_050 0.0 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
2 Hb_002639_110 0.1418385187 - - hypothetical protein L484_011673 [Morus notabilis]
3 Hb_001341_020 0.1514952012 - - Uncharacterised protein [Bordetella pertussis]
4 Hb_030131_030 0.1529057226 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
5 Hb_003089_020 0.1548759885 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
6 Hb_001223_010 0.1604550375 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
7 Hb_032258_010 0.1678014407 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
8 Hb_000676_200 0.1727216676 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
9 Hb_001080_030 0.1731552519 - - AMP dependent ligase, putative [Ricinus communis]
10 Hb_000012_160 0.1774828056 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
11 Hb_003038_160 0.1782843618 - - auxilin, putative [Ricinus communis]
12 Hb_000589_380 0.1784189736 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
13 Hb_002374_250 0.178437887 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002908_040 0.1814962999 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
15 Hb_004108_060 0.1830039342 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
16 Hb_001890_010 0.185325896 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_173808_010 0.185516391 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_001832_040 0.1860645591 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003186_040 0.1869138321 - - PREDICTED: protein DENND6A [Jatropha curcas]
20 Hb_006452_240 0.1883296432 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002226_050 Hb_002226_050 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_001341_020 Hb_001341_020 Hb_002226_050--Hb_001341_020 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_001223_010 Hb_001223_010 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010 Hb_007472_090 Hb_007472_090 Hb_002639_110--Hb_007472_090 Hb_002908_040 Hb_002908_040 Hb_002639_110--Hb_002908_040 Hb_011485_060 Hb_011485_060 Hb_002639_110--Hb_011485_060 Hb_002639_110--Hb_001223_010 Hb_000365_240 Hb_000365_240 Hb_002639_110--Hb_000365_240 Hb_002609_080 Hb_002609_080 Hb_002639_110--Hb_002609_080 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_002631_250 Hb_002631_250 Hb_030131_030--Hb_002631_250 Hb_000676_200 Hb_000676_200 Hb_030131_030--Hb_000676_200 Hb_002374_250 Hb_002374_250 Hb_030131_030--Hb_002374_250 Hb_008511_140 Hb_008511_140 Hb_030131_030--Hb_008511_140 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_030131_030--Hb_003089_020 Hb_003089_020--Hb_002374_250 Hb_006274_050 Hb_006274_050 Hb_003089_020--Hb_006274_050 Hb_012098_070 Hb_012098_070 Hb_003089_020--Hb_012098_070 Hb_003475_020 Hb_003475_020 Hb_003089_020--Hb_003475_020 Hb_000110_270 Hb_000110_270 Hb_003089_020--Hb_000110_270 Hb_003089_020--Hb_000676_200 Hb_001223_010--Hb_002908_040 Hb_000589_380 Hb_000589_380 Hb_001223_010--Hb_000589_380 Hb_001223_010--Hb_007472_090 Hb_001223_010--Hb_011485_060 Hb_001726_100 Hb_001726_100 Hb_001223_010--Hb_001726_100 Hb_001427_040 Hb_001427_040 Hb_032258_010--Hb_001427_040 Hb_002518_120 Hb_002518_120 Hb_032258_010--Hb_002518_120 Hb_002282_070 Hb_002282_070 Hb_032258_010--Hb_002282_070 Hb_000220_210 Hb_000220_210 Hb_032258_010--Hb_000220_210 Hb_002542_160 Hb_002542_160 Hb_032258_010--Hb_002542_160 Hb_155832_010 Hb_155832_010 Hb_032258_010--Hb_155832_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171907 0.246815 0.206321 0.066554 0.0795189 0.159781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190822 0.112565 0.207837 0.527521 1.00127

CAGE analysis