Hb_006452_240

Information

Type -
Description -
Location Contig6452: 251417-257331
Sequence    

Annotation

kegg
ID rcu:RCOM_0011080
description transcription cofactor, putative
nr
ID XP_012073105.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
swissprot
ID F4I171
description Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1
trembl
ID B9SWU1
description Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52323: 250775-255094 , PASA_asmbl_52324: 255391-255577 , PASA_asmbl_52325: 255579-257699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_240 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
2 Hb_007546_030 0.1210880038 - - transcription cofactor, putative [Ricinus communis]
3 Hb_003805_070 0.1300103827 - - PREDICTED: sacsin [Jatropha curcas]
4 Hb_000589_380 0.1490759338 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
5 Hb_001341_020 0.1574502689 - - Uncharacterised protein [Bordetella pertussis]
6 Hb_001223_010 0.1615288115 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
7 Hb_000800_110 0.1621572167 - - NAD dehydrogenase, putative [Ricinus communis]
8 Hb_005523_010 0.1650730216 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
9 Hb_000022_170 0.1685505683 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
10 Hb_011616_020 0.1728970483 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
11 Hb_001726_100 0.1759660203 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
12 Hb_099270_030 0.1761916386 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
13 Hb_148593_010 0.1768114685 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
14 Hb_156279_010 0.1823842678 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
15 Hb_007120_060 0.1829677 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
16 Hb_004218_250 0.1856740921 - - PREDICTED: beta-galactosidase [Jatropha curcas]
17 Hb_001726_050 0.186191239 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
18 Hb_001408_120 0.1863939608 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_044380_020 0.1864695213 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_002226_050 0.1883296432 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_240 Hb_006452_240 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_003805_070 Hb_003805_070 Hb_006452_240--Hb_003805_070 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_001341_020 Hb_001341_020 Hb_006452_240--Hb_001341_020 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_007472_080 Hb_007472_080 Hb_007546_030--Hb_007472_080 Hb_001006_010 Hb_001006_010 Hb_007546_030--Hb_001006_010 Hb_007546_030--Hb_000589_380 Hb_001726_100 Hb_001726_100 Hb_007546_030--Hb_001726_100 Hb_007546_030--Hb_000800_110 Hb_004218_250 Hb_004218_250 Hb_007546_030--Hb_004218_250 Hb_005523_010 Hb_005523_010 Hb_003805_070--Hb_005523_010 Hb_148593_010 Hb_148593_010 Hb_003805_070--Hb_148593_010 Hb_011616_020 Hb_011616_020 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_001912_080 Hb_001912_080 Hb_003805_070--Hb_001912_080 Hb_000589_380--Hb_001223_010 Hb_000589_380--Hb_001726_100 Hb_000574_530 Hb_000574_530 Hb_000589_380--Hb_000574_530 Hb_000589_380--Hb_099270_030 Hb_015292_060 Hb_015292_060 Hb_000589_380--Hb_015292_060 Hb_001726_050 Hb_001726_050 Hb_000589_380--Hb_001726_050 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_002226_050 Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_001341_020--Hb_148593_010 Hb_002908_040 Hb_002908_040 Hb_001223_010--Hb_002908_040 Hb_007472_090 Hb_007472_090 Hb_001223_010--Hb_007472_090 Hb_002639_110 Hb_002639_110 Hb_001223_010--Hb_002639_110 Hb_011485_060 Hb_011485_060 Hb_001223_010--Hb_011485_060 Hb_001223_010--Hb_001726_100 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64375 22.4069 3.40474 6.62299 9.38062 16.7448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73881 2.75817 8.37667 40.3606 53.4134

CAGE analysis