Hb_007546_030

Information

Type -
Description -
Location Contig7546: 32600-36643
Sequence    

Annotation

kegg
ID rcu:RCOM_0011080
description transcription cofactor, putative
nr
ID XP_002530460.1
description transcription cofactor, putative [Ricinus communis]
swissprot
ID F4I171
description Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1
trembl
ID B9SWU1
description Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1
Gene Ontology
ID GO:0003712
description mediator of rna polymerase ii transcription subunit 15a-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57004: 32315-35595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007546_030 0.0 - - transcription cofactor, putative [Ricinus communis]
2 Hb_007472_080 0.1040516171 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_001006_010 0.1062077594 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_000589_380 0.109703034 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
5 Hb_001726_100 0.1156538648 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
6 Hb_000800_110 0.1175168762 - - NAD dehydrogenase, putative [Ricinus communis]
7 Hb_004218_250 0.120414391 - - PREDICTED: beta-galactosidase [Jatropha curcas]
8 Hb_006452_240 0.1210880038 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
9 Hb_114151_020 0.1235826161 - - glucan water dikinase 2 [Manihot esculenta]
10 Hb_000175_120 0.1318899464 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
11 Hb_001223_010 0.1319631719 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
12 Hb_001124_050 0.1321014802 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
13 Hb_007120_060 0.1347483654 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
14 Hb_001477_020 0.1367709189 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
15 Hb_000445_130 0.1371134247 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
16 Hb_185830_070 0.1375563371 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
17 Hb_000940_150 0.1379573209 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
18 Hb_000574_530 0.1382034796 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
19 Hb_000022_170 0.1421282397 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
20 Hb_009486_090 0.1422419728 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007546_030 Hb_007546_030 Hb_007472_080 Hb_007472_080 Hb_007546_030--Hb_007472_080 Hb_001006_010 Hb_001006_010 Hb_007546_030--Hb_001006_010 Hb_000589_380 Hb_000589_380 Hb_007546_030--Hb_000589_380 Hb_001726_100 Hb_001726_100 Hb_007546_030--Hb_001726_100 Hb_000800_110 Hb_000800_110 Hb_007546_030--Hb_000800_110 Hb_004218_250 Hb_004218_250 Hb_007546_030--Hb_004218_250 Hb_007472_080--Hb_001006_010 Hb_000866_110 Hb_000866_110 Hb_007472_080--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_007472_080--Hb_005181_050 Hb_001477_020 Hb_001477_020 Hb_007472_080--Hb_001477_020 Hb_000661_260 Hb_000661_260 Hb_007472_080--Hb_000661_260 Hb_001006_010--Hb_000866_110 Hb_001006_010--Hb_005181_050 Hb_000271_120 Hb_000271_120 Hb_001006_010--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_001006_010--Hb_011925_020 Hb_000049_250 Hb_000049_250 Hb_001006_010--Hb_000049_250 Hb_001223_010 Hb_001223_010 Hb_000589_380--Hb_001223_010 Hb_000589_380--Hb_001726_100 Hb_000574_530 Hb_000574_530 Hb_000589_380--Hb_000574_530 Hb_099270_030 Hb_099270_030 Hb_000589_380--Hb_099270_030 Hb_015292_060 Hb_015292_060 Hb_000589_380--Hb_015292_060 Hb_001726_050 Hb_001726_050 Hb_000589_380--Hb_001726_050 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_001726_100--Hb_001726_050 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060 Hb_185830_070 Hb_185830_070 Hb_004218_250--Hb_185830_070 Hb_000940_150 Hb_000940_150 Hb_004218_250--Hb_000940_150 Hb_000317_350 Hb_000317_350 Hb_004218_250--Hb_000317_350 Hb_004218_250--Hb_000022_170 Hb_004218_250--Hb_000022_150 Hb_002027_190 Hb_002027_190 Hb_004218_250--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.547 44.2331 8.90625 21.2025 10.8471 23.5663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3833 7.39649 10.4524 54.5763 63.6802

CAGE analysis