Hb_007472_080

Information

Type -
Description -
Location Contig7472: 183090-184312
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56698: 171908-188147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007472_080 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_001006_010 0.0676842536 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_007546_030 0.1040516171 - - transcription cofactor, putative [Ricinus communis]
4 Hb_000866_110 0.1172241941 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
5 Hb_005181_050 0.1234221816 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
6 Hb_001477_020 0.1293560106 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
7 Hb_000661_260 0.1313778025 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
8 Hb_000271_120 0.1349398136 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
9 Hb_011925_020 0.134989732 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_000445_130 0.1353163863 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
11 Hb_000049_250 0.1356761984 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
12 Hb_114151_020 0.1362580744 - - glucan water dikinase 2 [Manihot esculenta]
13 Hb_007012_040 0.1377800772 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
14 Hb_000220_120 0.1387639307 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
15 Hb_000167_120 0.1388225897 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
16 Hb_001341_010 0.1390510082 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
17 Hb_000125_180 0.1392506034 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
18 Hb_053575_020 0.1405474444 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
19 Hb_033799_010 0.1406038303 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
20 Hb_002025_030 0.1418448178 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_007472_080 Hb_007472_080 Hb_001006_010 Hb_001006_010 Hb_007472_080--Hb_001006_010 Hb_007546_030 Hb_007546_030 Hb_007472_080--Hb_007546_030 Hb_000866_110 Hb_000866_110 Hb_007472_080--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_007472_080--Hb_005181_050 Hb_001477_020 Hb_001477_020 Hb_007472_080--Hb_001477_020 Hb_000661_260 Hb_000661_260 Hb_007472_080--Hb_000661_260 Hb_001006_010--Hb_000866_110 Hb_001006_010--Hb_005181_050 Hb_000271_120 Hb_000271_120 Hb_001006_010--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_001006_010--Hb_011925_020 Hb_000049_250 Hb_000049_250 Hb_001006_010--Hb_000049_250 Hb_007546_030--Hb_001006_010 Hb_000589_380 Hb_000589_380 Hb_007546_030--Hb_000589_380 Hb_001726_100 Hb_001726_100 Hb_007546_030--Hb_001726_100 Hb_000800_110 Hb_000800_110 Hb_007546_030--Hb_000800_110 Hb_004218_250 Hb_004218_250 Hb_007546_030--Hb_004218_250 Hb_002235_310 Hb_002235_310 Hb_000866_110--Hb_002235_310 Hb_000205_250 Hb_000205_250 Hb_000866_110--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_000866_110--Hb_000125_180 Hb_000866_110--Hb_011925_020 Hb_000866_110--Hb_000271_120 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250 Hb_000200_110 Hb_000200_110 Hb_001477_020--Hb_000200_110 Hb_000220_120 Hb_000220_120 Hb_001477_020--Hb_000220_120 Hb_003849_280 Hb_003849_280 Hb_001477_020--Hb_003849_280 Hb_007012_040 Hb_007012_040 Hb_001477_020--Hb_007012_040 Hb_007245_020 Hb_007245_020 Hb_001477_020--Hb_007245_020 Hb_001124_050 Hb_001124_050 Hb_001477_020--Hb_001124_050 Hb_002524_030 Hb_002524_030 Hb_000661_260--Hb_002524_030 Hb_003014_030 Hb_003014_030 Hb_000661_260--Hb_003014_030 Hb_000083_270 Hb_000083_270 Hb_000661_260--Hb_000083_270 Hb_029243_020 Hb_029243_020 Hb_000661_260--Hb_029243_020 Hb_000631_110 Hb_000631_110 Hb_000661_260--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_000661_260--Hb_000574_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31371 1.12472 0.354104 0.644584 0.117314 0.461725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161798 0.286364 0.236792 1.33827 1.31717

CAGE analysis