Hb_002524_030

Information

Type -
Description -
Location Contig2524: 12908-19397
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26418: 13139-13761 , PASA_asmbl_26419: 13145-13263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002524_030 0.0 - - -
2 Hb_000661_260 0.1046303889 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
3 Hb_000735_070 0.1433763696 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
4 Hb_007472_080 0.1434346758 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_002153_030 0.1474686485 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
6 Hb_003517_020 0.1481256764 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
7 Hb_001322_180 0.1492117961 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
8 Hb_000866_110 0.154223654 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
9 Hb_001006_010 0.1570546082 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_000345_340 0.1583362951 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
11 Hb_000049_250 0.160701191 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
12 Hb_000081_120 0.1607281626 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
13 Hb_001625_010 0.1614534978 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
14 Hb_011925_020 0.1633111515 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_000940_150 0.1640109218 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
16 Hb_001799_190 0.1647597964 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
17 Hb_185830_070 0.1668662554 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
18 Hb_000271_120 0.1671008008 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
19 Hb_000227_330 0.1675167001 - - Acyl-CoA synthetase [Ricinus communis]
20 Hb_004218_250 0.1678665748 - - PREDICTED: beta-galactosidase [Jatropha curcas]

Gene co-expression network

sample Hb_002524_030 Hb_002524_030 Hb_000661_260 Hb_000661_260 Hb_002524_030--Hb_000661_260 Hb_000735_070 Hb_000735_070 Hb_002524_030--Hb_000735_070 Hb_007472_080 Hb_007472_080 Hb_002524_030--Hb_007472_080 Hb_002153_030 Hb_002153_030 Hb_002524_030--Hb_002153_030 Hb_003517_020 Hb_003517_020 Hb_002524_030--Hb_003517_020 Hb_001322_180 Hb_001322_180 Hb_002524_030--Hb_001322_180 Hb_003014_030 Hb_003014_030 Hb_000661_260--Hb_003014_030 Hb_000083_270 Hb_000083_270 Hb_000661_260--Hb_000083_270 Hb_029243_020 Hb_029243_020 Hb_000661_260--Hb_029243_020 Hb_000631_110 Hb_000631_110 Hb_000661_260--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_000661_260--Hb_000574_530 Hb_000227_330 Hb_000227_330 Hb_000735_070--Hb_000227_330 Hb_000347_110 Hb_000347_110 Hb_000735_070--Hb_000347_110 Hb_005217_040 Hb_005217_040 Hb_000735_070--Hb_005217_040 Hb_000816_020 Hb_000816_020 Hb_000735_070--Hb_000816_020 Hb_000735_070--Hb_003517_020 Hb_001006_010 Hb_001006_010 Hb_007472_080--Hb_001006_010 Hb_007546_030 Hb_007546_030 Hb_007472_080--Hb_007546_030 Hb_000866_110 Hb_000866_110 Hb_007472_080--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_007472_080--Hb_005181_050 Hb_001477_020 Hb_001477_020 Hb_007472_080--Hb_001477_020 Hb_007472_080--Hb_000661_260 Hb_002631_200 Hb_002631_200 Hb_002153_030--Hb_002631_200 Hb_007904_130 Hb_007904_130 Hb_002153_030--Hb_007904_130 Hb_002391_210 Hb_002391_210 Hb_002153_030--Hb_002391_210 Hb_001170_030 Hb_001170_030 Hb_002153_030--Hb_001170_030 Hb_000402_190 Hb_000402_190 Hb_002153_030--Hb_000402_190 Hb_005081_020 Hb_005081_020 Hb_002153_030--Hb_005081_020 Hb_000313_370 Hb_000313_370 Hb_003517_020--Hb_000313_370 Hb_003576_050 Hb_003576_050 Hb_003517_020--Hb_003576_050 Hb_000928_040 Hb_000928_040 Hb_003517_020--Hb_000928_040 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_007919_040 Hb_007919_040 Hb_003517_020--Hb_007919_040 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_000834_230 Hb_000834_230 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_002027_190 Hb_002027_190 Hb_001322_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27405 5.0366 1.13316 2.10767 0.507078 1.02105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.68252 1.07304 1.19137 6.69684 3.03602

CAGE analysis