Hb_005217_040

Information

Type -
Description -
Location Contig5217: 44643-46756
Sequence    

Annotation

kegg
ID rcu:RCOM_1684260
description ATPP2-A13, putative
nr
ID XP_012086994.1
description PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
swissprot
ID Q9LN77
description F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1
trembl
ID A0A067K125
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46819: 44925-46546 , PASA_asmbl_46820: 44925-46792 , PASA_asmbl_46821: 44925-45872 , PASA_asmbl_46822: 45289-45711 , PASA_asmbl_46823: 45907-46131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005217_040 0.0 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
2 Hb_011032_010 0.1031900979 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_003125_180 0.1152462913 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
4 Hb_053575_020 0.1179463607 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
5 Hb_065500_010 0.1191623013 - - -
6 Hb_000019_170 0.1252085575 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
7 Hb_169051_010 0.1256820751 - - JHL06B08.1 [Jatropha curcas]
8 Hb_000243_400 0.1264798205 - - PREDICTED: nucleolin-like [Jatropha curcas]
9 Hb_102763_010 0.1397544148 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
10 Hb_000823_010 0.1402417737 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
11 Hb_001430_100 0.1445457797 - - cytochrome P450, putative [Ricinus communis]
12 Hb_005000_090 0.1445508622 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
13 Hb_003058_200 0.1448320641 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
14 Hb_000674_010 0.1479244862 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
15 Hb_000133_090 0.1487096531 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_000321_090 0.1515217654 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
17 Hb_001477_020 0.1526149936 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
18 Hb_001446_060 0.153860448 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000221_180 0.1544443079 - - VQ motif-containing family protein [Populus trichocarpa]
20 Hb_000875_070 0.155681983 - - -

Gene co-expression network

sample Hb_005217_040 Hb_005217_040 Hb_011032_010 Hb_011032_010 Hb_005217_040--Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_005217_040--Hb_003125_180 Hb_053575_020 Hb_053575_020 Hb_005217_040--Hb_053575_020 Hb_065500_010 Hb_065500_010 Hb_005217_040--Hb_065500_010 Hb_000019_170 Hb_000019_170 Hb_005217_040--Hb_000019_170 Hb_169051_010 Hb_169051_010 Hb_005217_040--Hb_169051_010 Hb_011032_010--Hb_003125_180 Hb_011032_010--Hb_053575_020 Hb_011032_010--Hb_169051_010 Hb_003058_200 Hb_003058_200 Hb_011032_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_003125_180--Hb_169051_010 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_003125_180--Hb_000674_010 Hb_003125_180--Hb_003058_200 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_000684_360 Hb_000684_360 Hb_053575_020--Hb_000684_360 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_001410_010 Hb_001410_010 Hb_065500_010--Hb_001410_010 Hb_000019_170--Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_000019_170--Hb_002072_010 Hb_102763_010 Hb_102763_010 Hb_000019_170--Hb_102763_010 Hb_000823_010 Hb_000823_010 Hb_000019_170--Hb_000823_010 Hb_000157_070 Hb_000157_070 Hb_000019_170--Hb_000157_070 Hb_169051_010--Hb_000684_360 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_169051_010--Hb_053575_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01678 15.949 4.43995 13.2932 6.07349 2.56346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07474 2.09905 2.23184 21.1798 17.2046

CAGE analysis