Hb_000661_260

Information

Type -
Description -
Location Contig661: 273877-280993
Sequence    

Annotation

kegg
ID rcu:RCOM_1578690
description hypothetical protein
nr
ID XP_012090038.1
description PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RIF3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52998: 274011-274465 , PASA_asmbl_52999: 278866-279219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_260 0.0 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
2 Hb_002524_030 0.1046303889 - - -
3 Hb_003014_030 0.1053705328 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
4 Hb_000083_270 0.1080587681 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
5 Hb_029243_020 0.1179816986 - - ENTH/VHS/GAT family protein [Theobroma cacao]
6 Hb_000631_110 0.1196271164 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
7 Hb_000574_530 0.1198841111 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
8 Hb_002153_030 0.1199399027 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
9 Hb_009486_090 0.1200505363 - - RNA binding protein, putative [Ricinus communis]
10 Hb_000589_380 0.1249605221 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
11 Hb_185830_070 0.1249870799 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
12 Hb_000940_150 0.1253351872 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
13 Hb_000049_250 0.1271378752 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
14 Hb_000009_410 0.127149241 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
15 Hb_004218_250 0.1280320629 - - PREDICTED: beta-galactosidase [Jatropha curcas]
16 Hb_002631_200 0.1284282011 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
17 Hb_014231_010 0.129612151 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
18 Hb_004705_020 0.1299228579 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
19 Hb_007472_080 0.1313778025 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_001006_010 0.1323505618 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_260 Hb_000661_260 Hb_002524_030 Hb_002524_030 Hb_000661_260--Hb_002524_030 Hb_003014_030 Hb_003014_030 Hb_000661_260--Hb_003014_030 Hb_000083_270 Hb_000083_270 Hb_000661_260--Hb_000083_270 Hb_029243_020 Hb_029243_020 Hb_000661_260--Hb_029243_020 Hb_000631_110 Hb_000631_110 Hb_000661_260--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_000661_260--Hb_000574_530 Hb_000735_070 Hb_000735_070 Hb_002524_030--Hb_000735_070 Hb_007472_080 Hb_007472_080 Hb_002524_030--Hb_007472_080 Hb_002153_030 Hb_002153_030 Hb_002524_030--Hb_002153_030 Hb_003517_020 Hb_003517_020 Hb_002524_030--Hb_003517_020 Hb_001322_180 Hb_001322_180 Hb_002524_030--Hb_001322_180 Hb_015183_080 Hb_015183_080 Hb_003014_030--Hb_015183_080 Hb_003014_030--Hb_029243_020 Hb_004705_020 Hb_004705_020 Hb_003014_030--Hb_004705_020 Hb_009486_090 Hb_009486_090 Hb_003014_030--Hb_009486_090 Hb_001124_050 Hb_001124_050 Hb_003014_030--Hb_001124_050 Hb_003014_030--Hb_000083_270 Hb_001699_280 Hb_001699_280 Hb_000083_270--Hb_001699_280 Hb_000083_270--Hb_000631_110 Hb_000340_490 Hb_000340_490 Hb_000083_270--Hb_000340_490 Hb_002005_080 Hb_002005_080 Hb_000083_270--Hb_002005_080 Hb_000083_270--Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_000083_270--Hb_001628_070 Hb_029243_020--Hb_004705_020 Hb_000009_410 Hb_000009_410 Hb_029243_020--Hb_000009_410 Hb_004204_010 Hb_004204_010 Hb_029243_020--Hb_004204_010 Hb_000656_060 Hb_000656_060 Hb_029243_020--Hb_000656_060 Hb_003047_020 Hb_003047_020 Hb_029243_020--Hb_003047_020 Hb_000940_150 Hb_000940_150 Hb_000631_110--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_000631_110--Hb_000175_120 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_000631_110--Hb_002005_080 Hb_185830_070 Hb_185830_070 Hb_000631_110--Hb_185830_070 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98317 7.88593 1.87366 2.69745 1.21526 2.29162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48684 1.46259 3.17817 8.11876 5.90232

CAGE analysis