Hb_029243_020

Information

Type -
Description -
Location Contig29243: 10019-16702
Sequence    

Annotation

kegg
ID tcc:TCM_019768
description ENTH/VHS/GAT family protein
nr
ID XP_007033604.1
description ENTH/VHS/GAT family protein [Theobroma cacao]
swissprot
ID Q68FJ8
description TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
trembl
ID A0A061EHP0
description ENTH/VHS/GAT family protein OS=Theobroma cacao GN=TCM_019768 PE=4 SV=1
Gene Ontology
ID GO:0005622
description target of myb protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30650: 10129-15348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029243_020 0.0 - - ENTH/VHS/GAT family protein [Theobroma cacao]
2 Hb_003014_030 0.086019226 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
3 Hb_004705_020 0.0950794273 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
4 Hb_000009_410 0.0952877986 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
5 Hb_004204_010 0.0955386378 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
6 Hb_000656_060 0.0969411791 - - DNA binding protein, putative [Ricinus communis]
7 Hb_003047_020 0.1006054192 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
8 Hb_002780_010 0.1024597655 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
9 Hb_000024_040 0.1036127994 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
10 Hb_011021_050 0.104510047 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
11 Hb_007234_010 0.1057565444 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
12 Hb_021596_010 0.1065534353 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
13 Hb_024185_010 0.1072679734 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
14 Hb_002007_160 0.1116486763 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
15 Hb_001488_180 0.111675174 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
16 Hb_000661_130 0.1118622549 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
17 Hb_005408_030 0.1122141883 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
18 Hb_002095_070 0.1132950257 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
19 Hb_000261_150 0.1138081767 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006531_020 0.1153880228 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_029243_020 Hb_029243_020 Hb_003014_030 Hb_003014_030 Hb_029243_020--Hb_003014_030 Hb_004705_020 Hb_004705_020 Hb_029243_020--Hb_004705_020 Hb_000009_410 Hb_000009_410 Hb_029243_020--Hb_000009_410 Hb_004204_010 Hb_004204_010 Hb_029243_020--Hb_004204_010 Hb_000656_060 Hb_000656_060 Hb_029243_020--Hb_000656_060 Hb_003047_020 Hb_003047_020 Hb_029243_020--Hb_003047_020 Hb_015183_080 Hb_015183_080 Hb_003014_030--Hb_015183_080 Hb_003014_030--Hb_004705_020 Hb_009486_090 Hb_009486_090 Hb_003014_030--Hb_009486_090 Hb_001124_050 Hb_001124_050 Hb_003014_030--Hb_001124_050 Hb_000083_270 Hb_000083_270 Hb_003014_030--Hb_000083_270 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_005408_030 Hb_005408_030 Hb_000009_410--Hb_005408_030 Hb_000009_410--Hb_006531_020 Hb_000934_210 Hb_000934_210 Hb_000009_410--Hb_000934_210 Hb_001951_170 Hb_001951_170 Hb_000009_410--Hb_001951_170 Hb_011021_050 Hb_011021_050 Hb_000009_410--Hb_011021_050 Hb_006031_010 Hb_006031_010 Hb_000009_410--Hb_006031_010 Hb_004204_010--Hb_005977_070 Hb_001488_180 Hb_001488_180 Hb_004204_010--Hb_001488_180 Hb_004204_010--Hb_005408_030 Hb_004204_010--Hb_004705_020 Hb_009658_030 Hb_009658_030 Hb_004204_010--Hb_009658_030 Hb_004204_010--Hb_011021_050 Hb_005186_040 Hb_005186_040 Hb_000656_060--Hb_005186_040 Hb_000656_060--Hb_011021_050 Hb_001726_050 Hb_001726_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_021596_010 Hb_021596_010 Hb_003047_020--Hb_021596_010 Hb_000003_410 Hb_000003_410 Hb_003047_020--Hb_000003_410 Hb_020805_150 Hb_020805_150 Hb_003047_020--Hb_020805_150 Hb_000703_200 Hb_000703_200 Hb_003047_020--Hb_000703_200 Hb_012490_010 Hb_012490_010 Hb_003047_020--Hb_012490_010 Hb_009302_030 Hb_009302_030 Hb_003047_020--Hb_009302_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62457 38.0857 9.17648 8.50172 7.80769 10.8644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.7239 6.06307 15.6278 19.5252 21.7558

CAGE analysis