Hb_004204_010

Information

Type -
Description -
Location Contig4204: 14282-23304
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05850g
description POPTRDRAFT_661800, POPTRDRAFT_661849; hypothetical protein
nr
ID XP_012080360.1
description PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K533
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11707 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41512: 17246-17390 , PASA_asmbl_41513: 17471-23545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_010 0.0 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
2 Hb_005977_070 0.0503941401 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_001488_180 0.0687582043 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
4 Hb_005408_030 0.0701254669 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
5 Hb_004705_020 0.0788144225 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
6 Hb_009658_030 0.0810792252 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
7 Hb_011021_050 0.0823838113 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
8 Hb_021596_010 0.0834829289 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_023344_160 0.0838613732 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
10 Hb_005186_040 0.0859996748 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
11 Hb_000170_130 0.086270758 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
12 Hb_008053_040 0.0876995367 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
13 Hb_000009_410 0.0883129026 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
14 Hb_003047_020 0.0887399092 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_001648_020 0.0897030148 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
16 Hb_000024_040 0.090244126 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
17 Hb_001723_100 0.0909560071 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
18 Hb_002686_230 0.0914992728 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000479_070 0.0917417477 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
20 Hb_002631_210 0.0919765539 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_010 Hb_004204_010 Hb_005977_070 Hb_005977_070 Hb_004204_010--Hb_005977_070 Hb_001488_180 Hb_001488_180 Hb_004204_010--Hb_001488_180 Hb_005408_030 Hb_005408_030 Hb_004204_010--Hb_005408_030 Hb_004705_020 Hb_004705_020 Hb_004204_010--Hb_004705_020 Hb_009658_030 Hb_009658_030 Hb_004204_010--Hb_009658_030 Hb_011021_050 Hb_011021_050 Hb_004204_010--Hb_011021_050 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_005977_070--Hb_009658_030 Hb_066920_030 Hb_066920_030 Hb_005977_070--Hb_066920_030 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_001473_110 Hb_001473_110 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_001488_180--Hb_000017_220 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_005408_030--Hb_011021_050 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_002686_230 Hb_002686_230 Hb_009658_030--Hb_002686_230 Hb_002272_030 Hb_002272_030 Hb_009658_030--Hb_002272_030 Hb_009658_030--Hb_066920_030 Hb_004435_030 Hb_004435_030 Hb_009658_030--Hb_004435_030 Hb_002157_080 Hb_002157_080 Hb_009658_030--Hb_002157_080 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_011021_050--Hb_005186_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96497 14.1857 4.78631 6.73666 3.92037 4.70959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50948 4.03844 7.40753 6.82103 11.3173

CAGE analysis