Hb_000313_370

Information

Type -
Description -
Location Contig313: 518362-554553
Sequence    

Annotation

kegg
ID tcc:TCM_006080
description Multidrug resistance-associated protein 2 isoform 1
nr
ID AIU41637.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q42093
description ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2
trembl
ID A0A097P9R5
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCC2 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33165: 518480-518607 , PASA_asmbl_33166: 518620-552317 , PASA_asmbl_33167: 519093-552317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_370 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000977_010 0.1071454293 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_003517_020 0.1118315927 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
4 Hb_003576_050 0.1322780147 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
5 Hb_002030_170 0.1382581926 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
6 Hb_001946_150 0.1413813058 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000362_110 0.1422216911 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
8 Hb_001091_020 0.1444742194 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_000645_240 0.1451214014 - - AMP dependent ligase, putative [Ricinus communis]
10 Hb_008175_030 0.1452719206 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
11 Hb_011310_200 0.1472716362 - - grr1, plant, putative [Ricinus communis]
12 Hb_005880_010 0.1502353866 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
13 Hb_002662_090 0.1538815506 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
14 Hb_001251_060 0.1568791525 - - aldo/keto reductase AKR [Manihot esculenta]
15 Hb_000022_180 0.1576943783 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_001369_160 0.1580519724 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
17 Hb_001410_010 0.1596324356 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
18 Hb_000189_120 0.1600408365 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
19 Hb_000778_020 0.1611843606 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
20 Hb_057079_020 0.1614365396 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000313_370 Hb_000313_370 Hb_000977_010 Hb_000977_010 Hb_000313_370--Hb_000977_010 Hb_003517_020 Hb_003517_020 Hb_000313_370--Hb_003517_020 Hb_003576_050 Hb_003576_050 Hb_000313_370--Hb_003576_050 Hb_002030_170 Hb_002030_170 Hb_000313_370--Hb_002030_170 Hb_001946_150 Hb_001946_150 Hb_000313_370--Hb_001946_150 Hb_000362_110 Hb_000362_110 Hb_000313_370--Hb_000362_110 Hb_002903_130 Hb_002903_130 Hb_000977_010--Hb_002903_130 Hb_000977_010--Hb_000362_110 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010 Hb_003517_020--Hb_003576_050 Hb_000928_040 Hb_000928_040 Hb_003517_020--Hb_000928_040 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_007919_040 Hb_007919_040 Hb_003517_020--Hb_007919_040 Hb_002524_030 Hb_002524_030 Hb_003517_020--Hb_002524_030 Hb_009823_010 Hb_009823_010 Hb_003576_050--Hb_009823_010 Hb_001408_050 Hb_001408_050 Hb_003576_050--Hb_001408_050 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_003576_050--Hb_000928_040 Hb_004631_080 Hb_004631_080 Hb_002030_170--Hb_004631_080 Hb_001842_060 Hb_001842_060 Hb_002030_170--Hb_001842_060 Hb_002660_040 Hb_002660_040 Hb_002030_170--Hb_002660_040 Hb_002272_230 Hb_002272_230 Hb_002030_170--Hb_002272_230 Hb_002662_090 Hb_002662_090 Hb_002030_170--Hb_002662_090 Hb_001946_150--Hb_002903_130 Hb_001946_150--Hb_000362_110 Hb_000866_090 Hb_000866_090 Hb_001946_150--Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.01897 66.6996 15.0258 23.0851 13.087 11.5593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44933 3.93834 4.96778 80.2884 19.1633

CAGE analysis