Hb_001248_030

Information

Type -
Description -
Location Contig1248: 42211-45284
Sequence    

Annotation

kegg
ID rcu:RCOM_0174740
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002527489.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9XIC7
description Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1
trembl
ID B9SNC0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0174740 PE=4 SV=1
Gene Ontology
ID GO:0004714
description somatic embryogenesis receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07512: 44443-44671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_007416_150 0.0930121291 - - sarcosine oxidase, putative [Ricinus communis]
3 Hb_009823_010 0.1310094303 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
4 Hb_003576_050 0.1322829012 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
5 Hb_001408_050 0.1330536584 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000638_090 0.1371735117 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_002304_140 0.1395831445 - - ring finger protein, putative [Ricinus communis]
8 Hb_011970_040 0.1463426255 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004195_110 0.1534101173 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
10 Hb_000670_110 0.1569844471 - - l-asparaginase, putative [Ricinus communis]
11 Hb_000181_160 0.1570397378 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
12 Hb_067034_030 0.1609438424 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_002030_170 0.163275922 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
14 Hb_000000_240 0.1632824458 - - PREDICTED: protein LYK5-like [Jatropha curcas]
15 Hb_007259_040 0.1665086193 - - hypothetical protein VITISV_005492 [Vitis vinifera]
16 Hb_004657_040 0.1665840919 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
17 Hb_000762_070 0.1681390773 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
18 Hb_000976_440 0.1693886644 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_007919_040 0.1705178821 - - PREDICTED: protein LYK5 [Jatropha curcas]
20 Hb_003052_200 0.1782982748 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]

Gene co-expression network

sample Hb_001248_030 Hb_001248_030 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_002304_140 Hb_002304_140 Hb_001248_030--Hb_002304_140 Hb_007416_150--Hb_002304_140 Hb_011970_040 Hb_011970_040 Hb_007416_150--Hb_011970_040 Hb_007416_150--Hb_009823_010 Hb_004195_110 Hb_004195_110 Hb_007416_150--Hb_004195_110 Hb_007416_150--Hb_003576_050 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_000181_160 Hb_000181_160 Hb_009823_010--Hb_000181_160 Hb_009823_010--Hb_000638_090 Hb_000098_310 Hb_000098_310 Hb_009823_010--Hb_000098_310 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_003576_050--Hb_001408_050 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040 Hb_003453_030 Hb_003453_030 Hb_001408_050--Hb_003453_030 Hb_001408_050--Hb_000181_160 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_001408_050--Hb_000638_090 Hb_000638_090--Hb_003576_050 Hb_004218_160 Hb_004218_160 Hb_000638_090--Hb_004218_160 Hb_117168_010 Hb_117168_010 Hb_000638_090--Hb_117168_010 Hb_002304_140--Hb_004195_110 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_002304_140--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6561 120.984 19.1539 27.3408 4.37047 8.72434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36657 9.39364 2.56687 164.956 14.8406

CAGE analysis