Hb_002304_140

Information

Type -
Description -
Location Contig2304: 119794-120447
Sequence    

Annotation

kegg
ID rcu:RCOM_1013150
description ring finger protein, putative
nr
ID XP_002522531.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9SLC3
description E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41 PE=1 SV=1
trembl
ID B9S962
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1013150 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase atl41-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_140 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_001248_030 0.1395831445 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_007416_150 0.1521439226 - - sarcosine oxidase, putative [Ricinus communis]
4 Hb_004195_110 0.155043609 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
5 Hb_009823_010 0.1621294077 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
6 Hb_000165_210 0.1681277542 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
7 Hb_000098_310 0.1727722864 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_004657_040 0.17710364 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
9 Hb_001408_050 0.1781750633 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000181_160 0.1795314448 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
11 Hb_007259_040 0.1824794715 - - hypothetical protein VITISV_005492 [Vitis vinifera]
12 Hb_003602_070 0.184217771 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
13 Hb_011200_020 0.1857909693 - - aldo-keto reductase, putative [Ricinus communis]
14 Hb_003845_020 0.1868421389 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001649_040 0.1880065727 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_007919_040 0.1881898689 - - PREDICTED: protein LYK5 [Jatropha curcas]
17 Hb_003576_050 0.1890851898 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
18 Hb_000638_090 0.1914392233 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000000_240 0.1919806101 - - PREDICTED: protein LYK5-like [Jatropha curcas]
20 Hb_000093_150 0.1931346078 - - 6-phosphogluconolactonase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002304_140 Hb_002304_140 Hb_001248_030 Hb_001248_030 Hb_002304_140--Hb_001248_030 Hb_007416_150 Hb_007416_150 Hb_002304_140--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_002304_140--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_000098_310 Hb_000098_310 Hb_002304_140--Hb_000098_310 Hb_001248_030--Hb_007416_150 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_011970_040 Hb_011970_040 Hb_007416_150--Hb_011970_040 Hb_007416_150--Hb_009823_010 Hb_007416_150--Hb_004195_110 Hb_007416_150--Hb_003576_050 Hb_000670_110 Hb_000670_110 Hb_004195_110--Hb_000670_110 Hb_004195_110--Hb_001248_030 Hb_004657_040 Hb_004657_040 Hb_004195_110--Hb_004657_040 Hb_000181_160 Hb_000181_160 Hb_004195_110--Hb_000181_160 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_009823_010--Hb_000181_160 Hb_009823_010--Hb_000638_090 Hb_009823_010--Hb_000098_310 Hb_000853_060 Hb_000853_060 Hb_000165_210--Hb_000853_060 Hb_000120_390 Hb_000120_390 Hb_000165_210--Hb_000120_390 Hb_000414_110 Hb_000414_110 Hb_000165_210--Hb_000414_110 Hb_001206_090 Hb_001206_090 Hb_000165_210--Hb_001206_090 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_011200_020 Hb_011200_020 Hb_000098_310--Hb_011200_020 Hb_000098_310--Hb_003576_050 Hb_000098_310--Hb_000181_160 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23343 5.5617 1.38576 1.69886 0.110939 0.463318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60287 0.699961 0.371636 13.2852 0.686053

CAGE analysis