Hb_000120_390

Information

Type -
Description -
Location Contig120: 271717-288207
Sequence    

Annotation

kegg
ID rcu:RCOM_0613550
description auxin:hydrogen symporter, putative
nr
ID XP_012087569.1
description PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID B9SRB0
description Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_0613550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06124: 281638-281962 , PASA_asmbl_06125: 284338-288020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_390 0.0 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
2 Hb_000165_210 0.1570060247 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
3 Hb_000318_200 0.1607534507 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
4 Hb_000417_320 0.1673617268 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
5 Hb_000414_110 0.1887531083 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
6 Hb_181110_010 0.1900194643 - - auxin:hydrogen symporter, putative [Ricinus communis]
7 Hb_003226_120 0.1911629535 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000093_150 0.1938595728 - - 6-phosphogluconolactonase, putative [Ricinus communis]
9 Hb_028811_010 0.198948601 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
10 Hb_001206_090 0.1998990334 - - pyruvate decarboxylase [Hevea brasiliensis]
11 Hb_000005_250 0.2014769132 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007943_160 0.20152827 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
13 Hb_012545_090 0.2016758364 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
14 Hb_119494_010 0.2036560424 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
15 Hb_000645_210 0.208581762 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
16 Hb_150360_020 0.2114437371 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
17 Hb_127886_010 0.2115429874 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_094437_060 0.2116408633 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
19 Hb_006275_010 0.211916611 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
20 Hb_039145_010 0.2121292337 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_390 Hb_000120_390 Hb_000165_210 Hb_000165_210 Hb_000120_390--Hb_000165_210 Hb_000318_200 Hb_000318_200 Hb_000120_390--Hb_000318_200 Hb_000417_320 Hb_000417_320 Hb_000120_390--Hb_000417_320 Hb_000414_110 Hb_000414_110 Hb_000120_390--Hb_000414_110 Hb_181110_010 Hb_181110_010 Hb_000120_390--Hb_181110_010 Hb_003226_120 Hb_003226_120 Hb_000120_390--Hb_003226_120 Hb_000853_060 Hb_000853_060 Hb_000165_210--Hb_000853_060 Hb_000165_210--Hb_000414_110 Hb_001206_090 Hb_001206_090 Hb_000165_210--Hb_001206_090 Hb_002304_140 Hb_002304_140 Hb_000165_210--Hb_002304_140 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_000318_200--Hb_000417_320 Hb_000796_250 Hb_000796_250 Hb_000318_200--Hb_000796_250 Hb_027380_200 Hb_027380_200 Hb_000318_200--Hb_027380_200 Hb_008147_070 Hb_008147_070 Hb_000318_200--Hb_008147_070 Hb_119494_010 Hb_119494_010 Hb_000318_200--Hb_119494_010 Hb_000417_320--Hb_000414_110 Hb_000417_320--Hb_119494_010 Hb_014894_010 Hb_014894_010 Hb_000417_320--Hb_014894_010 Hb_039145_010 Hb_039145_010 Hb_000417_320--Hb_039145_010 Hb_028811_010 Hb_028811_010 Hb_000417_320--Hb_028811_010 Hb_000414_110--Hb_028811_010 Hb_000808_170 Hb_000808_170 Hb_000414_110--Hb_000808_170 Hb_000061_090 Hb_000061_090 Hb_000414_110--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_000414_110--Hb_002291_010 Hb_003845_020 Hb_003845_020 Hb_181110_010--Hb_003845_020 Hb_009732_020 Hb_009732_020 Hb_181110_010--Hb_009732_020 Hb_001946_150 Hb_001946_150 Hb_181110_010--Hb_001946_150 Hb_002631_040 Hb_002631_040 Hb_181110_010--Hb_002631_040 Hb_006717_070 Hb_006717_070 Hb_181110_010--Hb_006717_070 Hb_008226_070 Hb_008226_070 Hb_003226_120--Hb_008226_070 Hb_028872_110 Hb_028872_110 Hb_003226_120--Hb_028872_110 Hb_004079_080 Hb_004079_080 Hb_003226_120--Hb_004079_080 Hb_000159_120 Hb_000159_120 Hb_003226_120--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_003226_120--Hb_003906_170 Hb_007943_160 Hb_007943_160 Hb_003226_120--Hb_007943_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.958686 3.31121 1.43009 2.33239 0.862514 1.18773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.01231 1.24221 1.86073 14.7423 0.954831

CAGE analysis