Hb_000318_200

Information

Type -
Description -
Location Contig318: 207706-209144
Sequence    

Annotation

kegg
ID rcu:RCOM_0939570
description Gibberellin 20 oxidase, putative (EC:1.14.11.11)
nr
ID XP_012072467.1
description PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
swissprot
ID Q39110
description Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=GA20OX1 PE=2 SV=2
trembl
ID A0A067KTI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04896 PE=3 SV=1
Gene Ontology
ID GO:0005506
description hyoscyamine 6-dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_200 0.0 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
2 Hb_000417_320 0.1437130811 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
3 Hb_000796_250 0.1501582611 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
4 Hb_000120_390 0.1607534507 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
5 Hb_027380_200 0.1684125087 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
6 Hb_008147_070 0.168485981 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_119494_010 0.1689186759 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
8 Hb_011861_120 0.1701362298 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
9 Hb_010407_170 0.1776760356 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
10 Hb_003253_050 0.1808886003 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
11 Hb_003038_140 0.1814275532 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
12 Hb_001726_110 0.1855527174 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
13 Hb_001828_020 0.1888804947 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
14 Hb_138585_110 0.1901954388 - - -
15 Hb_001902_190 0.1933095579 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
16 Hb_001486_030 0.1952158203 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003226_120 0.1956958535 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001104_240 0.1960174434 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_028872_110 0.1969850205 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
20 Hb_001529_050 0.2022591888 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]

Gene co-expression network

sample Hb_000318_200 Hb_000318_200 Hb_000417_320 Hb_000417_320 Hb_000318_200--Hb_000417_320 Hb_000796_250 Hb_000796_250 Hb_000318_200--Hb_000796_250 Hb_000120_390 Hb_000120_390 Hb_000318_200--Hb_000120_390 Hb_027380_200 Hb_027380_200 Hb_000318_200--Hb_027380_200 Hb_008147_070 Hb_008147_070 Hb_000318_200--Hb_008147_070 Hb_119494_010 Hb_119494_010 Hb_000318_200--Hb_119494_010 Hb_000414_110 Hb_000414_110 Hb_000417_320--Hb_000414_110 Hb_000417_320--Hb_119494_010 Hb_014894_010 Hb_014894_010 Hb_000417_320--Hb_014894_010 Hb_039145_010 Hb_039145_010 Hb_000417_320--Hb_039145_010 Hb_028811_010 Hb_028811_010 Hb_000417_320--Hb_028811_010 Hb_138585_110 Hb_138585_110 Hb_000796_250--Hb_138585_110 Hb_001117_070 Hb_001117_070 Hb_000796_250--Hb_001117_070 Hb_000260_290 Hb_000260_290 Hb_000796_250--Hb_000260_290 Hb_001049_020 Hb_001049_020 Hb_000796_250--Hb_001049_020 Hb_004230_040 Hb_004230_040 Hb_000796_250--Hb_004230_040 Hb_000165_210 Hb_000165_210 Hb_000120_390--Hb_000165_210 Hb_000120_390--Hb_000417_320 Hb_000120_390--Hb_000414_110 Hb_181110_010 Hb_181110_010 Hb_000120_390--Hb_181110_010 Hb_003226_120 Hb_003226_120 Hb_000120_390--Hb_003226_120 Hb_012317_020 Hb_012317_020 Hb_027380_200--Hb_012317_020 Hb_001726_110 Hb_001726_110 Hb_027380_200--Hb_001726_110 Hb_003038_140 Hb_003038_140 Hb_027380_200--Hb_003038_140 Hb_006501_160 Hb_006501_160 Hb_027380_200--Hb_006501_160 Hb_008790_020 Hb_008790_020 Hb_027380_200--Hb_008790_020 Hb_001021_080 Hb_001021_080 Hb_008147_070--Hb_001021_080 Hb_008147_070--Hb_119494_010 Hb_077562_030 Hb_077562_030 Hb_008147_070--Hb_077562_030 Hb_109002_020 Hb_109002_020 Hb_008147_070--Hb_109002_020 Hb_002400_410 Hb_002400_410 Hb_008147_070--Hb_002400_410 Hb_172632_110 Hb_172632_110 Hb_008147_070--Hb_172632_110 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_119494_010--Hb_002400_410 Hb_119494_010--Hb_014894_010 Hb_001214_090 Hb_001214_090 Hb_119494_010--Hb_001214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68935 12.1499 2.05317 7.6323 4.00683 1.89354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0068 6.33037 5.23596 27.1976 2.35538

CAGE analysis