Hb_012317_020

Information

Type -
Description -
Location Contig12317: 5852-15723
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07044: 14799-15734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012317_020 0.0 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_000699_230 0.1348007733 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_000983_080 0.1417616037 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
4 Hb_001726_110 0.1440635397 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
5 Hb_000061_120 0.1441151963 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
6 Hb_000625_090 0.1460601983 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003038_140 0.1566103807 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
8 Hb_027380_200 0.1572561993 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
9 Hb_009193_100 0.1573465356 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
10 Hb_006501_160 0.1615457337 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
11 Hb_073171_100 0.161804295 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
12 Hb_128589_010 0.1653155661 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
13 Hb_005779_030 0.1678874806 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
14 Hb_000997_180 0.1721055757 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007747_080 0.1729327982 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006816_480 0.1731006587 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
17 Hb_000302_200 0.173116603 - - ornithine cyclodeaminase, putative [Ricinus communis]
18 Hb_028707_070 0.174091084 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_000975_350 0.1755496744 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_000792_040 0.1777839094 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]

Gene co-expression network

sample Hb_012317_020 Hb_012317_020 Hb_000699_230 Hb_000699_230 Hb_012317_020--Hb_000699_230 Hb_000983_080 Hb_000983_080 Hb_012317_020--Hb_000983_080 Hb_001726_110 Hb_001726_110 Hb_012317_020--Hb_001726_110 Hb_000061_120 Hb_000061_120 Hb_012317_020--Hb_000061_120 Hb_000625_090 Hb_000625_090 Hb_012317_020--Hb_000625_090 Hb_003038_140 Hb_003038_140 Hb_012317_020--Hb_003038_140 Hb_000997_180 Hb_000997_180 Hb_000699_230--Hb_000997_180 Hb_000110_300 Hb_000110_300 Hb_000699_230--Hb_000110_300 Hb_001268_120 Hb_001268_120 Hb_000699_230--Hb_001268_120 Hb_000699_230--Hb_000625_090 Hb_009193_100 Hb_009193_100 Hb_000699_230--Hb_009193_100 Hb_002915_060 Hb_002915_060 Hb_000699_230--Hb_002915_060 Hb_000983_080--Hb_009193_100 Hb_000983_080--Hb_000699_230 Hb_128589_010 Hb_128589_010 Hb_000983_080--Hb_128589_010 Hb_011872_020 Hb_011872_020 Hb_000983_080--Hb_011872_020 Hb_000059_300 Hb_000059_300 Hb_000983_080--Hb_000059_300 Hb_005489_140 Hb_005489_140 Hb_001726_110--Hb_005489_140 Hb_001726_110--Hb_003038_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001019_050 Hb_001019_050 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_112198_010 Hb_112198_010 Hb_000061_120--Hb_112198_010 Hb_001146_010 Hb_001146_010 Hb_000061_120--Hb_001146_010 Hb_004435_030 Hb_004435_030 Hb_000061_120--Hb_004435_030 Hb_007747_080 Hb_007747_080 Hb_000061_120--Hb_007747_080 Hb_010128_100 Hb_010128_100 Hb_000061_120--Hb_010128_100 Hb_001268_410 Hb_001268_410 Hb_000061_120--Hb_001268_410 Hb_000625_090--Hb_002915_060 Hb_000625_090--Hb_000997_180 Hb_013057_020 Hb_013057_020 Hb_000625_090--Hb_013057_020 Hb_006006_040 Hb_006006_040 Hb_000625_090--Hb_006006_040 Hb_000227_160 Hb_000227_160 Hb_000625_090--Hb_000227_160 Hb_000625_090--Hb_000110_300 Hb_001369_250 Hb_001369_250 Hb_003038_140--Hb_001369_250 Hb_001623_160 Hb_001623_160 Hb_003038_140--Hb_001623_160 Hb_001332_040 Hb_001332_040 Hb_003038_140--Hb_001332_040 Hb_002675_140 Hb_002675_140 Hb_003038_140--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_003038_140--Hb_010174_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16492 3.68763 1.0366 3.07658 0.0226736 0.843706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44442 1.93441 1.46898 4.1093 2.07706

CAGE analysis