Hb_000625_090

Information

Type -
Description -
Location Contig625: 72181-74169
Sequence    

Annotation

kegg
ID rcu:RCOM_0430440
description hypothetical protein
nr
ID XP_002533794.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6BTZ4
description Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4
trembl
ID B9T6C5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0430440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51639: 73014-73270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002915_060 0.0931601548 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
3 Hb_000997_180 0.0955787017 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013057_020 0.1059913858 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
5 Hb_006006_040 0.1067816391 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
6 Hb_000227_160 0.1118579679 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
7 Hb_000110_300 0.1141502476 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
8 Hb_001157_200 0.1150313401 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
9 Hb_012262_030 0.1151067654 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
10 Hb_000012_240 0.1168376888 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
11 Hb_172426_030 0.1173560792 - - acetylglucosaminyltransferase, putative [Ricinus communis]
12 Hb_000983_050 0.1175398355 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_005914_140 0.117882425 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
14 Hb_019280_010 0.1183292414 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
15 Hb_000367_090 0.1183299934 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
16 Hb_001900_100 0.1190024838 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
17 Hb_132880_040 0.119459429 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
18 Hb_128589_010 0.1205152524 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
19 Hb_000699_230 0.1207208642 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_005215_020 0.1219324048 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]

Gene co-expression network

sample Hb_000625_090 Hb_000625_090 Hb_002915_060 Hb_002915_060 Hb_000625_090--Hb_002915_060 Hb_000997_180 Hb_000997_180 Hb_000625_090--Hb_000997_180 Hb_013057_020 Hb_013057_020 Hb_000625_090--Hb_013057_020 Hb_006006_040 Hb_006006_040 Hb_000625_090--Hb_006006_040 Hb_000227_160 Hb_000227_160 Hb_000625_090--Hb_000227_160 Hb_000110_300 Hb_000110_300 Hb_000625_090--Hb_000110_300 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_023344_150 Hb_023344_150 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020 Hb_000699_230 Hb_000699_230 Hb_000997_180--Hb_000699_230 Hb_000997_180--Hb_002915_060 Hb_003327_070 Hb_003327_070 Hb_000997_180--Hb_003327_070 Hb_000490_060 Hb_000490_060 Hb_000997_180--Hb_000490_060 Hb_006501_160 Hb_006501_160 Hb_000997_180--Hb_006501_160 Hb_000836_280 Hb_000836_280 Hb_013057_020--Hb_000836_280 Hb_006441_020 Hb_006441_020 Hb_013057_020--Hb_006441_020 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_013057_020--Hb_023344_150 Hb_002781_030 Hb_002781_030 Hb_013057_020--Hb_002781_030 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_006006_040--Hb_005215_020 Hb_000085_450 Hb_000085_450 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040 Hb_008748_030 Hb_008748_030 Hb_000227_160--Hb_008748_030 Hb_028487_160 Hb_028487_160 Hb_000227_160--Hb_028487_160 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_009646_010 Hb_009646_010 Hb_000110_300--Hb_009646_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20819 5.07691 2.35156 6.71623 0.88177 1.4285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06543 2.42983 2.8794 5.02565 2.79365

CAGE analysis