Hb_001146_010

Information

Type -
Description -
Location Contig1146: 7949-11319
Sequence    

Annotation

kegg
ID rcu:RCOM_1313240
description cystathionine gamma-synthase, putative (EC:2.5.1.48)
nr
ID XP_002518910.1
description cystathionine gamma-synthase, putative [Ricinus communis]
swissprot
ID Q9SGU9
description Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1
trembl
ID B9RYU1
description Cystathionine gamma-synthase, putative OS=Ricinus communis GN=RCOM_1313240 PE=3 SV=1
Gene Ontology
ID GO:0003824
description methionine gamma-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04419: 10140-12507 , PASA_asmbl_04420: 10140-12507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001146_010 0.0 - - cystathionine gamma-synthase, putative [Ricinus communis]
2 Hb_034688_020 0.0917939312 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
3 Hb_028487_140 0.093763942 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]
4 Hb_000061_120 0.1165696289 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
5 Hb_000152_330 0.1241557448 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
6 Hb_000538_230 0.1286626644 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
7 Hb_000749_050 0.141567119 - - mitochondrial thioredoxin [Hevea brasiliensis]
8 Hb_001411_140 0.1496307522 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
9 Hb_000061_230 0.1514330999 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
10 Hb_001969_080 0.1525630258 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
11 Hb_000173_470 0.1533099672 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
12 Hb_003647_060 0.1545437433 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
13 Hb_000215_320 0.156453926 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_010519_050 0.1565859527 - - galactokinase, putative [Ricinus communis]
15 Hb_002307_270 0.1574462467 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_011218_090 0.1596525023 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
17 Hb_005396_150 0.1606169382 - - protein binding protein, putative [Ricinus communis]
18 Hb_000430_020 0.161570163 - - -
19 Hb_112198_010 0.164278241 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
20 Hb_006788_140 0.1647955847 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]

Gene co-expression network

sample Hb_001146_010 Hb_001146_010 Hb_034688_020 Hb_034688_020 Hb_001146_010--Hb_034688_020 Hb_028487_140 Hb_028487_140 Hb_001146_010--Hb_028487_140 Hb_000061_120 Hb_000061_120 Hb_001146_010--Hb_000061_120 Hb_000152_330 Hb_000152_330 Hb_001146_010--Hb_000152_330 Hb_000538_230 Hb_000538_230 Hb_001146_010--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_001146_010--Hb_000749_050 Hb_034688_020--Hb_000749_050 Hb_034688_020--Hb_000538_230 Hb_005074_030 Hb_005074_030 Hb_034688_020--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_034688_020--Hb_000430_020 Hb_000173_470 Hb_000173_470 Hb_034688_020--Hb_000173_470 Hb_001411_140 Hb_001411_140 Hb_028487_140--Hb_001411_140 Hb_001969_080 Hb_001969_080 Hb_028487_140--Hb_001969_080 Hb_002307_270 Hb_002307_270 Hb_028487_140--Hb_002307_270 Hb_028487_140--Hb_034688_020 Hb_000172_100 Hb_000172_100 Hb_028487_140--Hb_000172_100 Hb_112198_010 Hb_112198_010 Hb_000061_120--Hb_112198_010 Hb_004435_030 Hb_004435_030 Hb_000061_120--Hb_004435_030 Hb_007747_080 Hb_007747_080 Hb_000061_120--Hb_007747_080 Hb_010128_100 Hb_010128_100 Hb_000061_120--Hb_010128_100 Hb_001268_410 Hb_001268_410 Hb_000061_120--Hb_001268_410 Hb_000270_120 Hb_000270_120 Hb_000152_330--Hb_000270_120 Hb_000656_390 Hb_000656_390 Hb_000152_330--Hb_000656_390 Hb_000951_130 Hb_000951_130 Hb_000152_330--Hb_000951_130 Hb_000152_330--Hb_001411_140 Hb_000152_330--Hb_000173_470 Hb_001723_100 Hb_001723_100 Hb_000152_330--Hb_001723_100 Hb_000538_230--Hb_000430_020 Hb_000215_320 Hb_000215_320 Hb_000538_230--Hb_000215_320 Hb_001159_110 Hb_001159_110 Hb_000538_230--Hb_001159_110 Hb_000538_230--Hb_005074_030 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_002045_070 Hb_002045_070 Hb_000749_050--Hb_002045_070 Hb_000749_050--Hb_000173_470 Hb_000890_150 Hb_000890_150 Hb_000749_050--Hb_000890_150 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9861 38.9581 9.91595 35.5327 7.45043 5.97242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0937 16.8325 29.8027 19.5587 17.4128

CAGE analysis