Hb_034688_020

Information

Type -
Description -
Location Contig34688: 12005-13259
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12160g
description POPTRDRAFT_564545; hypothetical protein
nr
ID XP_012082120.1
description PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K313
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18359 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36160: 12806-13768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034688_020 0.0 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
2 Hb_001146_010 0.0917939312 - - cystathionine gamma-synthase, putative [Ricinus communis]
3 Hb_000749_050 0.0962075918 - - mitochondrial thioredoxin [Hevea brasiliensis]
4 Hb_000538_230 0.1008739595 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
5 Hb_005074_030 0.1092048406 - - -
6 Hb_000430_020 0.1092830112 - - -
7 Hb_000173_470 0.1104425782 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
8 Hb_002042_130 0.1123935224 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
9 Hb_001159_110 0.1156492705 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
10 Hb_000465_300 0.1201373872 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
11 Hb_007508_090 0.1240231124 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_000710_060 0.1279482367 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
13 Hb_000007_140 0.1280459566 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
14 Hb_000215_320 0.1304343883 - - phosphofructokinase [Hevea brasiliensis]
15 Hb_003647_060 0.1312608651 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
16 Hb_001825_060 0.1313310522 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
17 Hb_000152_330 0.1315471706 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
18 Hb_000230_390 0.1326844622 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
19 Hb_028487_140 0.1327497573 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]
20 Hb_000987_060 0.1343975277 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]

Gene co-expression network

sample Hb_034688_020 Hb_034688_020 Hb_001146_010 Hb_001146_010 Hb_034688_020--Hb_001146_010 Hb_000749_050 Hb_000749_050 Hb_034688_020--Hb_000749_050 Hb_000538_230 Hb_000538_230 Hb_034688_020--Hb_000538_230 Hb_005074_030 Hb_005074_030 Hb_034688_020--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_034688_020--Hb_000430_020 Hb_000173_470 Hb_000173_470 Hb_034688_020--Hb_000173_470 Hb_028487_140 Hb_028487_140 Hb_001146_010--Hb_028487_140 Hb_000061_120 Hb_000061_120 Hb_001146_010--Hb_000061_120 Hb_000152_330 Hb_000152_330 Hb_001146_010--Hb_000152_330 Hb_001146_010--Hb_000538_230 Hb_001146_010--Hb_000749_050 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_002045_070 Hb_002045_070 Hb_000749_050--Hb_002045_070 Hb_000749_050--Hb_000173_470 Hb_000890_150 Hb_000890_150 Hb_000749_050--Hb_000890_150 Hb_000215_320 Hb_000215_320 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090 Hb_000538_230--Hb_000430_020 Hb_000538_230--Hb_000215_320 Hb_001159_110 Hb_001159_110 Hb_000538_230--Hb_001159_110 Hb_000538_230--Hb_005074_030 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_005074_030--Hb_000430_020 Hb_005074_030--Hb_001159_110 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_000649_130 Hb_000649_130 Hb_005074_030--Hb_000649_130 Hb_005074_030--Hb_000749_050 Hb_015807_150 Hb_015807_150 Hb_000430_020--Hb_015807_150 Hb_000430_020--Hb_000890_150 Hb_000430_020--Hb_001159_110 Hb_000178_130 Hb_000178_130 Hb_000430_020--Hb_000178_130 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000173_470--Hb_000890_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95708 14.4294 3.89302 10.6525 2.79102 2.99075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5572 11.2011 11.9015 7.89412 5.3229

CAGE analysis