Hb_028487_140

Information

Type -
Description -
Location Contig28487: 136554-140360
Sequence    

Annotation

kegg
ID rcu:RCOM_0629030
description hypothetical protein
nr
ID XP_012072262.1
description PREDICTED: myosin-binding protein 2 [Jatropha curcas]
swissprot
ID Q9CAC4
description Myosin-binding protein 2 OS=Arabidopsis thaliana GN=MYOB2 PE=1 SV=1
trembl
ID B9SP67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29810: 137764-138571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_140 0.0 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]
2 Hb_001146_010 0.093763942 - - cystathionine gamma-synthase, putative [Ricinus communis]
3 Hb_001411_140 0.1170007677 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
4 Hb_001969_080 0.1242375665 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
5 Hb_002307_270 0.1243683814 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
6 Hb_034688_020 0.1327497573 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
7 Hb_000172_100 0.1335568784 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
8 Hb_000538_230 0.1399574266 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
9 Hb_000061_120 0.1420286581 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
10 Hb_000152_330 0.143390542 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
11 Hb_010222_070 0.1528415954 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
12 Hb_000964_130 0.1534230623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
13 Hb_001053_090 0.1540032886 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
14 Hb_146051_010 0.155822061 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000836_380 0.156598084 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
16 Hb_001217_050 0.1582282381 - - actin binding protein, putative [Ricinus communis]
17 Hb_007508_090 0.161104889 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
18 Hb_112198_010 0.1611059682 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
19 Hb_000430_020 0.1630119776 - - -
20 Hb_000173_470 0.1631070522 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_140 Hb_028487_140 Hb_001146_010 Hb_001146_010 Hb_028487_140--Hb_001146_010 Hb_001411_140 Hb_001411_140 Hb_028487_140--Hb_001411_140 Hb_001969_080 Hb_001969_080 Hb_028487_140--Hb_001969_080 Hb_002307_270 Hb_002307_270 Hb_028487_140--Hb_002307_270 Hb_034688_020 Hb_034688_020 Hb_028487_140--Hb_034688_020 Hb_000172_100 Hb_000172_100 Hb_028487_140--Hb_000172_100 Hb_001146_010--Hb_034688_020 Hb_000061_120 Hb_000061_120 Hb_001146_010--Hb_000061_120 Hb_000152_330 Hb_000152_330 Hb_001146_010--Hb_000152_330 Hb_000538_230 Hb_000538_230 Hb_001146_010--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_001146_010--Hb_000749_050 Hb_001411_140--Hb_002307_270 Hb_001405_160 Hb_001405_160 Hb_001411_140--Hb_001405_160 Hb_000836_380 Hb_000836_380 Hb_001411_140--Hb_000836_380 Hb_001411_140--Hb_000152_330 Hb_000951_130 Hb_000951_130 Hb_001411_140--Hb_000951_130 Hb_000753_230 Hb_000753_230 Hb_001411_140--Hb_000753_230 Hb_001969_080--Hb_000538_230 Hb_000215_320 Hb_000215_320 Hb_001969_080--Hb_000215_320 Hb_003373_030 Hb_003373_030 Hb_001969_080--Hb_003373_030 Hb_001377_510 Hb_001377_510 Hb_001969_080--Hb_001377_510 Hb_000106_140 Hb_000106_140 Hb_001969_080--Hb_000106_140 Hb_002307_270--Hb_000836_380 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_034688_020--Hb_000749_050 Hb_034688_020--Hb_000538_230 Hb_005074_030 Hb_005074_030 Hb_034688_020--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_034688_020--Hb_000430_020 Hb_034688_020--Hb_000173_470 Hb_004725_050 Hb_004725_050 Hb_000172_100--Hb_004725_050 Hb_000291_150 Hb_000291_150 Hb_000172_100--Hb_000291_150 Hb_066920_030 Hb_066920_030 Hb_000172_100--Hb_066920_030 Hb_003607_130 Hb_003607_130 Hb_000172_100--Hb_003607_130 Hb_003617_020 Hb_003617_020 Hb_000172_100--Hb_003617_020 Hb_000072_120 Hb_000072_120 Hb_000172_100--Hb_000072_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17611 19.8894 2.13916 16.6601 5.09029 4.83503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3309 6.67988 13.9925 8.89258 9.58886

CAGE analysis