Hb_000106_140

Information

Type -
Description -
Location Contig106: 189260-193408
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_140 0.0 - - -
2 Hb_002983_050 0.1070812107 - - PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
3 Hb_000009_240 0.113291431 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
4 Hb_001969_080 0.1261761146 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
5 Hb_001377_510 0.1295851728 - - ormdl, putative [Ricinus communis]
6 Hb_002391_270 0.1307037204 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
7 Hb_005914_080 0.1308952363 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
8 Hb_000645_090 0.1331411468 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006636_010 0.1444123724 - - PREDICTED: uncharacterized protein LOC105637987 [Jatropha curcas]
10 Hb_000414_130 0.1470513637 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
11 Hb_000023_280 0.1472393782 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
12 Hb_003697_050 0.14811099 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
13 Hb_000406_080 0.1493854799 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_004837_130 0.1496938945 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
15 Hb_000125_190 0.1510855143 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
16 Hb_002735_050 0.1531848601 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
17 Hb_003940_040 0.1540404031 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001136_010 0.1540970424 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
19 Hb_000023_090 0.1572223236 - - mak, putative [Ricinus communis]
20 Hb_002284_230 0.1573750403 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]

Gene co-expression network

sample Hb_000106_140 Hb_000106_140 Hb_002983_050 Hb_002983_050 Hb_000106_140--Hb_002983_050 Hb_000009_240 Hb_000009_240 Hb_000106_140--Hb_000009_240 Hb_001969_080 Hb_001969_080 Hb_000106_140--Hb_001969_080 Hb_001377_510 Hb_001377_510 Hb_000106_140--Hb_001377_510 Hb_002391_270 Hb_002391_270 Hb_000106_140--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000106_140--Hb_005914_080 Hb_000329_340 Hb_000329_340 Hb_002983_050--Hb_000329_340 Hb_000645_090 Hb_000645_090 Hb_002983_050--Hb_000645_090 Hb_000023_090 Hb_000023_090 Hb_002983_050--Hb_000023_090 Hb_148113_010 Hb_148113_010 Hb_002983_050--Hb_148113_010 Hb_000406_080 Hb_000406_080 Hb_002983_050--Hb_000406_080 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_000009_240--Hb_002391_270 Hb_000009_240--Hb_005914_080 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_003940_040 Hb_003940_040 Hb_000009_240--Hb_003940_040 Hb_000538_230 Hb_000538_230 Hb_001969_080--Hb_000538_230 Hb_000215_320 Hb_000215_320 Hb_001969_080--Hb_000215_320 Hb_003373_030 Hb_003373_030 Hb_001969_080--Hb_003373_030 Hb_001969_080--Hb_001377_510 Hb_028487_140 Hb_028487_140 Hb_001969_080--Hb_028487_140 Hb_001377_510--Hb_000645_090 Hb_000003_590 Hb_000003_590 Hb_001377_510--Hb_000003_590 Hb_022115_020 Hb_022115_020 Hb_001377_510--Hb_022115_020 Hb_007416_090 Hb_007416_090 Hb_001377_510--Hb_007416_090 Hb_002110_190 Hb_002110_190 Hb_001377_510--Hb_002110_190 Hb_007638_030 Hb_007638_030 Hb_001377_510--Hb_007638_030 Hb_000116_410 Hb_000116_410 Hb_002391_270--Hb_000116_410 Hb_002391_270--Hb_000645_090 Hb_028285_010 Hb_028285_010 Hb_002391_270--Hb_028285_010 Hb_000023_280 Hb_000023_280 Hb_002391_270--Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_002391_270--Hb_010142_030 Hb_144528_010 Hb_144528_010 Hb_005914_080--Hb_144528_010 Hb_005731_120 Hb_005731_120 Hb_005914_080--Hb_005731_120 Hb_005914_080--Hb_000023_280 Hb_005188_080 Hb_005188_080 Hb_005914_080--Hb_005188_080 Hb_005914_080--Hb_003940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.337594 0.882535 0.107675 1.92813 0.917354 1.24309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75999 1.34223 1.46283 1.41835 0.598849

CAGE analysis