Hb_005489_140

Information

Type -
Description -
Location Contig5489: 109131-114695
Sequence    

Annotation

kegg
ID rcu:RCOM_1680250
description Maspardin, putative
nr
ID XP_012087104.1
description PREDICTED: maspardin [Jatropha curcas]
swissprot
ID Q6PC62
description Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1
trembl
ID A0A067JNP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20757 PE=4 SV=1
Gene Ontology
ID GO:0016787
description maspardin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48173: 114046-114233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_140 0.0 - - PREDICTED: maspardin [Jatropha curcas]
2 Hb_107298_010 0.0816693494 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
3 Hb_025336_020 0.0875025096 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
4 Hb_089140_040 0.0920219416 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
5 Hb_001019_050 0.0956333886 - - PREDICTED: importin-13 [Jatropha curcas]
6 Hb_083799_010 0.1003532274 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_008790_020 0.1038970505 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
8 Hb_001726_110 0.1040840954 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
9 Hb_006502_030 0.1069325764 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
10 Hb_000088_270 0.1107203523 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
11 Hb_002272_170 0.1112997747 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
12 Hb_000395_220 0.111471867 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_003906_170 0.1145801114 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_002836_100 0.1164974638 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
15 Hb_049436_010 0.1165208646 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
16 Hb_008053_060 0.1165211267 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
17 Hb_000008_420 0.1168607971 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
18 Hb_002995_040 0.1169588037 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
19 Hb_001004_140 0.118952407 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
20 Hb_162150_010 0.1190179114 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005489_140 Hb_005489_140 Hb_107298_010 Hb_107298_010 Hb_005489_140--Hb_107298_010 Hb_025336_020 Hb_025336_020 Hb_005489_140--Hb_025336_020 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_001019_050 Hb_001019_050 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020 Hb_004837_280 Hb_004837_280 Hb_107298_010--Hb_004837_280 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290 Hb_000088_270 Hb_000088_270 Hb_025336_020--Hb_000088_270 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_012022_080 Hb_012022_080 Hb_025336_020--Hb_012022_080 Hb_025336_020--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_025336_020--Hb_000008_420 Hb_006468_010 Hb_006468_010 Hb_089140_040--Hb_006468_010 Hb_012092_050 Hb_012092_050 Hb_089140_040--Hb_012092_050 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130 Hb_001019_050--Hb_000088_270 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_001019_050--Hb_000159_120 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_001726_110 Hb_001726_110 Hb_008790_020--Hb_001726_110 Hb_162150_010 Hb_162150_010 Hb_008790_020--Hb_162150_010 Hb_008790_020--Hb_001019_050 Hb_008790_020--Hb_025336_020 Hb_049436_010 Hb_049436_010 Hb_008790_020--Hb_049436_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115281 0.254084 0.171792 0.284789 0.0789069 0.154383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145588 0.143161 0.0534994 0.435155 0.119084

CAGE analysis