Hb_001900_100

Information

Type -
Description -
Location Contig1900: 155127-158132
Sequence    

Annotation

kegg
ID rcu:RCOM_0866500
description hypothetical protein
nr
ID XP_012070494.1
description PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02765 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger b-box domain containing protein 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18942: 155166-157745 , PASA_asmbl_18943: 155069-157745 , PASA_asmbl_18944: 155066-156876 , PASA_asmbl_18945: 155268-155942
cDNA
(Sanger)
(ID:Location)		 001_P12.ab1: 155166-157078 , 030_F12.ab1: 155166-157013 , 031_F12.ab1: 155166-156060

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001900_100 0.0 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
2 Hb_001811_170 0.0840419139 - - dynamin, putative [Ricinus communis]
3 Hb_004837_280 0.0898329203 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
4 Hb_107298_010 0.0912328224 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
5 Hb_000144_120 0.0913665178 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_004450_070 0.0915686278 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
7 Hb_019280_010 0.0921429547 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
8 Hb_000683_050 0.094893753 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
9 Hb_007441_280 0.0953129173 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
10 Hb_027760_060 0.0955197467 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_002995_040 0.0981930019 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
12 Hb_001226_130 0.0989962178 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
13 Hb_001587_030 0.0994032057 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
14 Hb_000157_070 0.0995320578 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
15 Hb_007416_070 0.100328172 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
16 Hb_000535_050 0.1008900674 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
17 Hb_001097_040 0.1017280968 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
18 Hb_004030_060 0.1022306106 - - receptor protein kinase zmpk1, putative [Ricinus communis]
19 Hb_000152_700 0.1023772313 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
20 Hb_005074_020 0.1034511845 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001900_100 Hb_001900_100 Hb_001811_170 Hb_001811_170 Hb_001900_100--Hb_001811_170 Hb_004837_280 Hb_004837_280 Hb_001900_100--Hb_004837_280 Hb_107298_010 Hb_107298_010 Hb_001900_100--Hb_107298_010 Hb_000144_120 Hb_000144_120 Hb_001900_100--Hb_000144_120 Hb_004450_070 Hb_004450_070 Hb_001900_100--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_001900_100--Hb_019280_010 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_004837_280--Hb_000342_050 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_004837_280--Hb_001226_130 Hb_005489_140 Hb_005489_140 Hb_107298_010--Hb_005489_140 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_001019_050 Hb_001019_050 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290 Hb_007441_280 Hb_007441_280 Hb_000144_120--Hb_007441_280 Hb_012760_040 Hb_012760_040 Hb_000144_120--Hb_012760_040 Hb_001004_140 Hb_001004_140 Hb_000144_120--Hb_001004_140 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001221_020 Hb_001221_020 Hb_000144_120--Hb_001221_020 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_019280_010--Hb_000237_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40841 31.6677 24.9343 47.8136 9.66759 14.1459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0522 10.1744 15.0816 51.2918 29.2438

CAGE analysis