Hb_001004_140

Information

Type -
Description -
Location Contig1004: 289362-292865
Sequence    

Annotation

kegg
ID pmum:103330425
description uncharacterized LOC103330425
nr
ID KDP41875.1
description hypothetical protein JCGZ_26893 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26893 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein JCGZ_26893

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00298: 289402-292822 , PASA_asmbl_00300: 289590-291809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_140 0.0 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
2 Hb_000008_090 0.0828123942 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
3 Hb_000144_120 0.0901156478 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_007185_040 0.0920648237 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
5 Hb_089140_040 0.0960553487 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
6 Hb_006468_010 0.0974525874 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
7 Hb_000174_140 0.0984335574 - - JHL23J11.8 [Jatropha curcas]
8 Hb_008053_060 0.0991813055 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
9 Hb_007257_060 0.1009963968 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
10 Hb_000251_040 0.1064864495 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
11 Hb_006006_040 0.1070955123 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
12 Hb_107298_010 0.1085373139 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
13 Hb_002272_170 0.1092788864 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
14 Hb_002596_060 0.1095868954 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001140_360 0.1097289106 - - -
16 Hb_000260_660 0.1105339695 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012092_050 0.1113499501 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
18 Hb_000890_160 0.1135907181 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
19 Hb_006502_030 0.1154504964 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
20 Hb_000345_320 0.1169855972 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_140 Hb_001004_140 Hb_000008_090 Hb_000008_090 Hb_001004_140--Hb_000008_090 Hb_000144_120 Hb_000144_120 Hb_001004_140--Hb_000144_120 Hb_007185_040 Hb_007185_040 Hb_001004_140--Hb_007185_040 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010 Hb_000174_140 Hb_000174_140 Hb_001004_140--Hb_000174_140 Hb_000251_040 Hb_000251_040 Hb_000008_090--Hb_000251_040 Hb_000008_090--Hb_000174_140 Hb_000260_660 Hb_000260_660 Hb_000008_090--Hb_000260_660 Hb_007257_060 Hb_007257_060 Hb_000008_090--Hb_007257_060 Hb_005180_010 Hb_005180_010 Hb_000008_090--Hb_005180_010 Hb_007441_280 Hb_007441_280 Hb_000144_120--Hb_007441_280 Hb_012760_040 Hb_012760_040 Hb_000144_120--Hb_012760_040 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001900_100 Hb_001900_100 Hb_000144_120--Hb_001900_100 Hb_001221_020 Hb_001221_020 Hb_000144_120--Hb_001221_020 Hb_172112_020 Hb_172112_020 Hb_007185_040--Hb_172112_020 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_010872_050 Hb_010872_050 Hb_007185_040--Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_089140_040--Hb_006468_010 Hb_012092_050 Hb_012092_050 Hb_089140_040--Hb_012092_050 Hb_005489_140 Hb_005489_140 Hb_089140_040--Hb_005489_140 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_000008_420 Hb_000008_420 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130 Hb_000890_160 Hb_000890_160 Hb_006468_010--Hb_000890_160 Hb_003636_080 Hb_003636_080 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_000174_140--Hb_000251_040 Hb_000174_140--Hb_000260_660 Hb_001396_010 Hb_001396_010 Hb_000174_140--Hb_001396_010 Hb_002217_220 Hb_002217_220 Hb_000174_140--Hb_002217_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59173 8.66934 10.3835 12.0044 4.23451 3.00059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80849 4.65794 3.65455 15.1097 3.99738

CAGE analysis