Hb_008790_020

Information

Type -
Description -
Location Contig8790: 77466-79989
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24240g
description POPTRDRAFT_763226; hypothetical protein
nr
ID XP_012077251.1
description PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07646 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61366: 77567-79827 , PASA_asmbl_61367: 77575-79948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008790_020 0.0 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
2 Hb_005489_140 0.1038970505 - - PREDICTED: maspardin [Jatropha curcas]
3 Hb_001726_110 0.1288162042 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
4 Hb_162150_010 0.1324199161 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001019_050 0.1341369067 - - PREDICTED: importin-13 [Jatropha curcas]
6 Hb_025336_020 0.1368722273 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
7 Hb_049436_010 0.1395370361 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
8 Hb_107298_010 0.1397920502 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
9 Hb_000302_200 0.1412355053 - - ornithine cyclodeaminase, putative [Ricinus communis]
10 Hb_001828_020 0.1425362785 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
11 Hb_011861_120 0.1440236513 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
12 Hb_012539_110 0.151230498 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
13 Hb_004994_090 0.1552864584 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
14 Hb_119530_010 0.1554688483 - - -
15 Hb_003906_170 0.1573539703 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000792_040 0.1580941639 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
17 Hb_003253_050 0.1586121464 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
18 Hb_004586_280 0.1612247501 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
19 Hb_083799_010 0.1614441466 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_003544_070 0.1616257877 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008790_020 Hb_008790_020 Hb_005489_140 Hb_005489_140 Hb_008790_020--Hb_005489_140 Hb_001726_110 Hb_001726_110 Hb_008790_020--Hb_001726_110 Hb_162150_010 Hb_162150_010 Hb_008790_020--Hb_162150_010 Hb_001019_050 Hb_001019_050 Hb_008790_020--Hb_001019_050 Hb_025336_020 Hb_025336_020 Hb_008790_020--Hb_025336_020 Hb_049436_010 Hb_049436_010 Hb_008790_020--Hb_049436_010 Hb_107298_010 Hb_107298_010 Hb_005489_140--Hb_107298_010 Hb_005489_140--Hb_025336_020 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_001726_110--Hb_005489_140 Hb_003038_140 Hb_003038_140 Hb_001726_110--Hb_003038_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_004994_090 Hb_004994_090 Hb_162150_010--Hb_004994_090 Hb_162150_010--Hb_005489_140 Hb_162150_010--Hb_049436_010 Hb_002344_060 Hb_002344_060 Hb_162150_010--Hb_002344_060 Hb_062416_010 Hb_062416_010 Hb_162150_010--Hb_062416_010 Hb_002874_090 Hb_002874_090 Hb_162150_010--Hb_002874_090 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_001019_050--Hb_025336_020 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_000159_120 Hb_000159_120 Hb_001019_050--Hb_000159_120 Hb_001019_050--Hb_107298_010 Hb_025336_020--Hb_000088_270 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_012022_080 Hb_012022_080 Hb_025336_020--Hb_012022_080 Hb_000008_420 Hb_000008_420 Hb_025336_020--Hb_000008_420 Hb_001031_090 Hb_001031_090 Hb_049436_010--Hb_001031_090 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000905_170 Hb_000905_170 Hb_049436_010--Hb_000905_170 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8489 45.8212 19.3321 39.1216 8.21863 29.5306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.5544 21.7851 4.27152 72.6509 21.1406

CAGE analysis