Hb_000260_290

Information

Type -
Description -
Location Contig260: 208468-210374
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14860g
description POPTRDRAFT_577232; hypothetical protein
nr
ID XP_012090980.1
description PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00616 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26987: 209095-209891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_290 0.0 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
2 Hb_000796_250 0.1582907011 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
3 Hb_015690_020 0.1746849347 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_001433_180 0.1802929662 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
5 Hb_001565_110 0.1837588335 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
6 Hb_003052_220 0.1852427442 - - -
7 Hb_031862_040 0.1943393398 - - purine transporter, putative [Ricinus communis]
8 Hb_001117_070 0.2044732658 - - 30S ribosomal protein S19, putative [Ricinus communis]
9 Hb_021888_050 0.2049247006 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
10 Hb_002374_380 0.2150128752 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
11 Hb_001049_020 0.2172901505 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004230_040 0.2178213298 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003442_070 0.2182907091 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
14 Hb_002035_110 0.2208501266 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
15 Hb_001486_030 0.2214634616 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005568_080 0.2229837152 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001619_080 0.2251319919 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000343_180 0.227867779 - - NDWp3 [Podospora anserina]
19 Hb_115241_010 0.2287514765 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
20 Hb_000948_080 0.2290620807 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_290 Hb_000260_290 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_015690_020 Hb_015690_020 Hb_000260_290--Hb_015690_020 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_003052_220 Hb_003052_220 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_138585_110 Hb_138585_110 Hb_000796_250--Hb_138585_110 Hb_001117_070 Hb_001117_070 Hb_000796_250--Hb_001117_070 Hb_000318_200 Hb_000318_200 Hb_000796_250--Hb_000318_200 Hb_001049_020 Hb_001049_020 Hb_000796_250--Hb_001049_020 Hb_004230_040 Hb_004230_040 Hb_000796_250--Hb_004230_040 Hb_000419_060 Hb_000419_060 Hb_015690_020--Hb_000419_060 Hb_001969_090 Hb_001969_090 Hb_015690_020--Hb_001969_090 Hb_003442_070 Hb_003442_070 Hb_015690_020--Hb_003442_070 Hb_002835_180 Hb_002835_180 Hb_015690_020--Hb_002835_180 Hb_015690_020--Hb_003052_220 Hb_007382_050 Hb_007382_050 Hb_001433_180--Hb_007382_050 Hb_001433_180--Hb_031862_040 Hb_003623_070 Hb_003623_070 Hb_001433_180--Hb_003623_070 Hb_000140_410 Hb_000140_410 Hb_001433_180--Hb_000140_410 Hb_001433_180--Hb_000796_250 Hb_000025_430 Hb_000025_430 Hb_001565_110--Hb_000025_430 Hb_013766_010 Hb_013766_010 Hb_001565_110--Hb_013766_010 Hb_082182_010 Hb_082182_010 Hb_001565_110--Hb_082182_010 Hb_005439_040 Hb_005439_040 Hb_001565_110--Hb_005439_040 Hb_140049_050 Hb_140049_050 Hb_001565_110--Hb_140049_050 Hb_001619_080 Hb_001619_080 Hb_003052_220--Hb_001619_080 Hb_003095_040 Hb_003095_040 Hb_003052_220--Hb_003095_040 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_005568_080 Hb_005568_080 Hb_003052_220--Hb_005568_080 Hb_001114_070 Hb_001114_070 Hb_031862_040--Hb_001114_070 Hb_008066_070 Hb_008066_070 Hb_031862_040--Hb_008066_070 Hb_031862_040--Hb_001049_020 Hb_005433_060 Hb_005433_060 Hb_031862_040--Hb_005433_060 Hb_001621_070 Hb_001621_070 Hb_031862_040--Hb_001621_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.606375 4.11389 0.37289 0.342292 0.592714 0.268106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10815 3.23203 2.73265 5.16926 0.175471

CAGE analysis