Hb_003095_040

Information

Type -
Description -
Location Contig3095: 28077-30446
Sequence    

Annotation

kegg
ID cic:CICLE_v10030016mg
description hypothetical protein
nr
ID XP_006423130.1
description hypothetical protein CICLE_v10030016mg [Citrus clementina]
swissprot
ID Q9SZ46
description Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1
trembl
ID V4SC16
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030016mg PE=3 SV=1
Gene Ontology
ID GO:0016491
description cytochrome p450 82c4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32700: 29700-30017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_040 0.0 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
2 Hb_003052_220 0.1365350092 - - -
3 Hb_029243_040 0.1814862774 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
4 Hb_001619_080 0.1882125557 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004129_150 0.1906970026 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
6 Hb_001279_130 0.1949212315 - - hypothetical protein L484_017676 [Morus notabilis]
7 Hb_033772_050 0.202429079 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
8 Hb_000094_110 0.2029642766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002138_010 0.2034773211 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
10 Hb_001832_120 0.2035444763 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
11 Hb_007218_100 0.2043876641 - - phosphofructokinase [Hevea brasiliensis]
12 Hb_012239_100 0.2051820993 - - hypothetical protein VITISV_043897 [Vitis vinifera]
13 Hb_010827_020 0.211800594 - - 60S ribosomal protein L17B [Hevea brasiliensis]
14 Hb_002374_400 0.2136076765 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
15 Hb_003847_020 0.2144092363 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_001579_140 0.2206785164 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
17 Hb_005568_080 0.2227165133 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002182_090 0.2235747914 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
19 Hb_000692_020 0.2243620154 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
20 Hb_000369_020 0.2244306492 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_003095_040 Hb_003095_040 Hb_003052_220 Hb_003052_220 Hb_003095_040--Hb_003052_220 Hb_029243_040 Hb_029243_040 Hb_003095_040--Hb_029243_040 Hb_001619_080 Hb_001619_080 Hb_003095_040--Hb_001619_080 Hb_004129_150 Hb_004129_150 Hb_003095_040--Hb_004129_150 Hb_001279_130 Hb_001279_130 Hb_003095_040--Hb_001279_130 Hb_033772_050 Hb_033772_050 Hb_003095_040--Hb_033772_050 Hb_003052_220--Hb_001619_080 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_005568_080 Hb_005568_080 Hb_003052_220--Hb_005568_080 Hb_000260_290 Hb_000260_290 Hb_003052_220--Hb_000260_290 Hb_015690_020 Hb_015690_020 Hb_003052_220--Hb_015690_020 Hb_000260_580 Hb_000260_580 Hb_029243_040--Hb_000260_580 Hb_029243_040--Hb_001279_130 Hb_000896_120 Hb_000896_120 Hb_029243_040--Hb_000896_120 Hb_001832_120 Hb_001832_120 Hb_029243_040--Hb_001832_120 Hb_000215_180 Hb_000215_180 Hb_029243_040--Hb_000215_180 Hb_002182_090 Hb_002182_090 Hb_029243_040--Hb_002182_090 Hb_000003_050 Hb_000003_050 Hb_001619_080--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_001619_080--Hb_000723_160 Hb_009510_040 Hb_009510_040 Hb_001619_080--Hb_009510_040 Hb_000243_140 Hb_000243_140 Hb_001619_080--Hb_000243_140 Hb_009486_190 Hb_009486_190 Hb_001619_080--Hb_009486_190 Hb_000175_130 Hb_000175_130 Hb_004129_150--Hb_000175_130 Hb_000094_110 Hb_000094_110 Hb_004129_150--Hb_000094_110 Hb_006738_010 Hb_006738_010 Hb_004129_150--Hb_006738_010 Hb_004129_150--Hb_033772_050 Hb_000032_350 Hb_000032_350 Hb_004129_150--Hb_000032_350 Hb_007943_140 Hb_007943_140 Hb_004129_150--Hb_007943_140 Hb_001279_130--Hb_002182_090 Hb_000380_020 Hb_000380_020 Hb_001279_130--Hb_000380_020 Hb_010594_030 Hb_010594_030 Hb_001279_130--Hb_010594_030 Hb_001102_250 Hb_001102_250 Hb_001279_130--Hb_001102_250 Hb_006594_020 Hb_006594_020 Hb_001279_130--Hb_006594_020 Hb_000363_140 Hb_000363_140 Hb_033772_050--Hb_000363_140 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76911 2.62086 0.101369 0.477771 0.316216 0.312236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.08342 13.0214 6.50727 5.48221 0.271823

CAGE analysis