Hb_004129_150

Information

Type transcription factor
Description TF Family: HSF
Location Contig4129: 111673-113967
Sequence    

Annotation

kegg
ID rcu:RCOM_0539820
description Heat shock factor protein, putative
nr
ID XP_012070195.1
description PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
swissprot
ID Q94J16
description Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1
trembl
ID A0A067L5N1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03936 PE=3 SV=1
Gene Ontology
ID GO:0003677
description heat stress transcription factor a-4b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40898: 112151-112831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_150 0.0 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
2 Hb_000175_130 0.1346559242 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
3 Hb_000094_110 0.1513780181 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006738_010 0.1540273101 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
5 Hb_033772_050 0.1588713023 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
6 Hb_000032_350 0.1641990611 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007943_140 0.1651305299 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
8 Hb_000544_110 0.1684101101 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
9 Hb_001052_030 0.1719907796 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
10 Hb_000329_660 0.1733533921 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
11 Hb_010594_030 0.1753273347 - - -
12 Hb_089100_020 0.1789818161 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
13 Hb_000963_030 0.1801210526 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
14 Hb_000853_240 0.1805746216 - - -
15 Hb_072912_020 0.181891539 - - abhydrolase domain containing, putative [Ricinus communis]
16 Hb_005137_020 0.1820486336 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
17 Hb_001102_250 0.1836607385 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
18 Hb_000692_020 0.1839718875 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
19 Hb_034585_050 0.1845728904 - - -
20 Hb_002471_160 0.1860690929 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_004129_150 Hb_004129_150 Hb_000175_130 Hb_000175_130 Hb_004129_150--Hb_000175_130 Hb_000094_110 Hb_000094_110 Hb_004129_150--Hb_000094_110 Hb_006738_010 Hb_006738_010 Hb_004129_150--Hb_006738_010 Hb_033772_050 Hb_033772_050 Hb_004129_150--Hb_033772_050 Hb_000032_350 Hb_000032_350 Hb_004129_150--Hb_000032_350 Hb_007943_140 Hb_007943_140 Hb_004129_150--Hb_007943_140 Hb_000853_240 Hb_000853_240 Hb_000175_130--Hb_000853_240 Hb_002045_230 Hb_002045_230 Hb_000175_130--Hb_002045_230 Hb_002326_180 Hb_002326_180 Hb_000175_130--Hb_002326_180 Hb_000316_100 Hb_000316_100 Hb_000175_130--Hb_000316_100 Hb_001052_030 Hb_001052_030 Hb_000175_130--Hb_001052_030 Hb_000696_220 Hb_000696_220 Hb_000175_130--Hb_000696_220 Hb_000094_110--Hb_001052_030 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_034585_050 Hb_034585_050 Hb_006738_010--Hb_034585_050 Hb_005505_020 Hb_005505_020 Hb_006738_010--Hb_005505_020 Hb_001785_040 Hb_001785_040 Hb_006738_010--Hb_001785_040 Hb_006738_010--Hb_002918_140 Hb_001159_200 Hb_001159_200 Hb_006738_010--Hb_001159_200 Hb_183086_040 Hb_183086_040 Hb_006738_010--Hb_183086_040 Hb_000363_140 Hb_000363_140 Hb_033772_050--Hb_000363_140 Hb_009486_190 Hb_009486_190 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_000032_350--Hb_000696_220 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_002248_100 Hb_002248_100 Hb_007943_140--Hb_002248_100 Hb_007943_140--Hb_000963_030 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_000172_420 Hb_000172_420 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5704 5.94536 0.455396 1.73387 0.802163 4.29733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4431 41.3912 14.0845 3.64457 0.452779

CAGE analysis