Hb_002326_180

Information

Type -
Description -
Location Contig2326: 165421-167896
Sequence    

Annotation

kegg
ID rcu:RCOM_1591990
description Protein Z, putative (EC:2.7.11.1)
nr
ID XP_002510281.1
description Protein Z, putative [Ricinus communis]
swissprot
ID Q9S7T8
description Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1
trembl
ID B9R7I8
description Protein Z, putative OS=Ricinus communis GN=RCOM_1591990 PE=3 SV=1
Gene Ontology
ID GO:0005615
description serine protease inhibitor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24471: 165490-167798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_180 0.0 - - Protein Z, putative [Ricinus communis]
2 Hb_000617_050 0.0980987791 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
3 Hb_000106_090 0.0991950323 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
4 Hb_001123_120 0.1013173009 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
5 Hb_000676_240 0.1039139594 - - thioredoxin H-type 2 [Hevea brasiliensis]
6 Hb_002045_230 0.1042873106 - - Ammonium transporter 2 [Theobroma cacao]
7 Hb_002876_360 0.113038936 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
8 Hb_011689_050 0.1154455063 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
9 Hb_000853_360 0.1199521633 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
10 Hb_000175_130 0.1200836642 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
11 Hb_000236_460 0.1217557914 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
12 Hb_001052_030 0.1229003564 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
13 Hb_000599_090 0.1243584975 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
14 Hb_006132_050 0.1251804587 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
15 Hb_008066_040 0.1263404773 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
16 Hb_034585_040 0.1318271105 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
17 Hb_000352_140 0.1338619463 - - -
18 Hb_017862_010 0.1355853079 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
19 Hb_009252_130 0.1357251568 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
20 Hb_001616_020 0.135961009 - - PREDICTED: wound-induced basic protein [Jatropha curcas]

Gene co-expression network

sample Hb_002326_180 Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_002326_180--Hb_000617_050 Hb_000106_090 Hb_000106_090 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002045_230 Hb_002045_230 Hb_002326_180--Hb_002045_230 Hb_002876_360 Hb_002876_360 Hb_002326_180--Hb_002876_360 Hb_000617_050--Hb_002876_360 Hb_003638_080 Hb_003638_080 Hb_000617_050--Hb_003638_080 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_009252_130 Hb_009252_130 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010 Hb_000352_140 Hb_000352_140 Hb_000106_090--Hb_000352_140 Hb_000106_090--Hb_002045_230 Hb_006132_050 Hb_006132_050 Hb_000106_090--Hb_006132_050 Hb_000106_090--Hb_002876_360 Hb_000599_090 Hb_000599_090 Hb_000106_090--Hb_000599_090 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_000676_240--Hb_017862_010 Hb_002918_140 Hb_002918_140 Hb_000676_240--Hb_002918_140 Hb_005841_040 Hb_005841_040 Hb_000676_240--Hb_005841_040 Hb_000676_240--Hb_002045_230 Hb_000676_240--Hb_001123_120 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_002876_360--Hb_003638_080 Hb_000395_240 Hb_000395_240 Hb_002876_360--Hb_000395_240 Hb_002876_360--Hb_000035_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.2999 16.9136 8.97043 18.348 61.5863 86.6149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.384 399.568 140.738 35.7766 2.25568

CAGE analysis