Hb_006132_050

Information

Type -
Description -
Location Contig6132: 33654-43063
Sequence    

Annotation

kegg
ID eus:EUTSA_v10028860mg
description hypothetical protein
nr
ID XP_006396241.1
description hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
swissprot
ID Q39196
description Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1
trembl
ID E4MXF5
description mRNA, clone: RTFL01-26-P19 OS=Eutrema halophilum PE=2 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane intrinsic protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51107: 33782-43022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_050 0.0 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
2 Hb_000853_360 0.0921431404 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
3 Hb_000106_090 0.1232357016 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
4 Hb_002326_180 0.1251804587 - - Protein Z, putative [Ricinus communis]
5 Hb_000617_050 0.1649518138 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
6 Hb_000777_060 0.1656225763 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001616_020 0.166236866 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
8 Hb_002876_360 0.1664460716 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
9 Hb_000340_440 0.1680125674 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
10 Hb_151930_020 0.1689975689 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
11 Hb_002784_140 0.1703272466 - - glutamate receptor 2 plant, putative [Ricinus communis]
12 Hb_000316_100 0.1707518761 - - protein with unknown function [Ricinus communis]
13 Hb_005276_100 0.171868328 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
14 Hb_000175_130 0.1793928944 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
15 Hb_003060_030 0.1812259326 - - conserved hypothetical protein 16 [Hevea brasiliensis]
16 Hb_000676_240 0.181405887 - - thioredoxin H-type 2 [Hevea brasiliensis]
17 Hb_001621_180 0.1825475699 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
18 Hb_005396_080 0.185351456 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
19 Hb_007477_090 0.1875783638 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
20 Hb_002045_230 0.1876407912 - - Ammonium transporter 2 [Theobroma cacao]

Gene co-expression network

sample Hb_006132_050 Hb_006132_050 Hb_000853_360 Hb_000853_360 Hb_006132_050--Hb_000853_360 Hb_000106_090 Hb_000106_090 Hb_006132_050--Hb_000106_090 Hb_002326_180 Hb_002326_180 Hb_006132_050--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_006132_050--Hb_000617_050 Hb_000777_060 Hb_000777_060 Hb_006132_050--Hb_000777_060 Hb_001616_020 Hb_001616_020 Hb_006132_050--Hb_001616_020 Hb_005276_100 Hb_005276_100 Hb_000853_360--Hb_005276_100 Hb_000853_360--Hb_002326_180 Hb_000853_360--Hb_000617_050 Hb_000853_360--Hb_001616_020 Hb_000853_360--Hb_000106_090 Hb_000106_090--Hb_002326_180 Hb_000352_140 Hb_000352_140 Hb_000106_090--Hb_000352_140 Hb_002045_230 Hb_002045_230 Hb_000106_090--Hb_002045_230 Hb_002876_360 Hb_002876_360 Hb_000106_090--Hb_002876_360 Hb_000599_090 Hb_000599_090 Hb_000106_090--Hb_000599_090 Hb_002326_180--Hb_000617_050 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002326_180--Hb_002045_230 Hb_002326_180--Hb_002876_360 Hb_000617_050--Hb_002876_360 Hb_003638_080 Hb_003638_080 Hb_000617_050--Hb_003638_080 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_009252_130 Hb_009252_130 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010 Hb_000061_160 Hb_000061_160 Hb_000777_060--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_000777_060--Hb_001621_180 Hb_000330_170 Hb_000330_170 Hb_000777_060--Hb_000330_170 Hb_002200_120 Hb_002200_120 Hb_000777_060--Hb_002200_120 Hb_007441_180 Hb_007441_180 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_001616_020--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_004958_050 Hb_004958_050 Hb_001616_020--Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_001616_020--Hb_002234_210 Hb_000144_110 Hb_000144_110 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9907 2.03645 0.223533 0.564629 12.3642 12.1315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4262 72.4901 16.0015 3.88511 0

CAGE analysis