Hb_000106_090

Information

Type -
Description -
Location Contig106: 140808-141443
Sequence    

Annotation

kegg
ID cit:102614091
description vitellogenin-2-like
nr
ID XP_012073101.1
description PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06084 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01969: 141165-141290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_090 0.0 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
2 Hb_002326_180 0.0991950323 - - Protein Z, putative [Ricinus communis]
3 Hb_000352_140 0.1196441994 - - -
4 Hb_002045_230 0.1222732301 - - Ammonium transporter 2 [Theobroma cacao]
5 Hb_006132_050 0.1232357016 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
6 Hb_002876_360 0.123667091 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
7 Hb_000599_090 0.125579887 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
8 Hb_000676_240 0.1292116472 - - thioredoxin H-type 2 [Hevea brasiliensis]
9 Hb_008066_040 0.148651568 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
10 Hb_000617_050 0.1487553587 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
11 Hb_021409_090 0.1489659908 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
12 Hb_005396_080 0.1499917639 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
13 Hb_001252_140 0.1503900954 - - catalytic, putative [Ricinus communis]
14 Hb_000853_360 0.150427344 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
15 Hb_001621_180 0.1534034052 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
16 Hb_000236_460 0.1535078083 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
17 Hb_000035_440 0.1557235369 - - -
18 Hb_001123_120 0.1593913573 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
19 Hb_009252_130 0.1594094117 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
20 Hb_000777_060 0.1596349094 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000106_090 Hb_000106_090 Hb_002326_180 Hb_002326_180 Hb_000106_090--Hb_002326_180 Hb_000352_140 Hb_000352_140 Hb_000106_090--Hb_000352_140 Hb_002045_230 Hb_002045_230 Hb_000106_090--Hb_002045_230 Hb_006132_050 Hb_006132_050 Hb_000106_090--Hb_006132_050 Hb_002876_360 Hb_002876_360 Hb_000106_090--Hb_002876_360 Hb_000599_090 Hb_000599_090 Hb_000106_090--Hb_000599_090 Hb_000617_050 Hb_000617_050 Hb_002326_180--Hb_000617_050 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002326_180--Hb_002045_230 Hb_002326_180--Hb_002876_360 Hb_005841_050 Hb_005841_050 Hb_000352_140--Hb_005841_050 Hb_000352_140--Hb_002045_230 Hb_011245_020 Hb_011245_020 Hb_000352_140--Hb_011245_020 Hb_000352_140--Hb_000599_090 Hb_000184_220 Hb_000184_220 Hb_000352_140--Hb_000184_220 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_000853_360 Hb_000853_360 Hb_006132_050--Hb_000853_360 Hb_006132_050--Hb_002326_180 Hb_006132_050--Hb_000617_050 Hb_000777_060 Hb_000777_060 Hb_006132_050--Hb_000777_060 Hb_001616_020 Hb_001616_020 Hb_006132_050--Hb_001616_020 Hb_002876_360--Hb_000617_050 Hb_003638_080 Hb_003638_080 Hb_002876_360--Hb_003638_080 Hb_000395_240 Hb_000395_240 Hb_002876_360--Hb_000395_240 Hb_002876_360--Hb_000035_440 Hb_009252_130 Hb_009252_130 Hb_000599_090--Hb_009252_130 Hb_000563_590 Hb_000563_590 Hb_000599_090--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_000599_090--Hb_001621_180 Hb_000061_480 Hb_000061_480 Hb_000599_090--Hb_000061_480 Hb_000111_280 Hb_000111_280 Hb_000599_090--Hb_000111_280 Hb_000531_020 Hb_000531_020 Hb_000599_090--Hb_000531_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7063 2.8486 0.651314 11.6431 31.2713 37.884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.31 166.999 54.6046 8.96458 2.13396

CAGE analysis