Hb_000352_140

Information

Type -
Description -
Location Contig352: 142366-143488
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_140 0.0 - - -
2 Hb_005841_050 0.1088897487 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
3 Hb_002045_230 0.1127050891 - - Ammonium transporter 2 [Theobroma cacao]
4 Hb_011245_020 0.1150039407 - - Ferrochelatase [Medicago truncatula]
5 Hb_000599_090 0.1175906174 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
6 Hb_000106_090 0.1196441994 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
7 Hb_000184_220 0.1275321592 - - hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
8 Hb_000676_240 0.1296231695 - - thioredoxin H-type 2 [Hevea brasiliensis]
9 Hb_002326_180 0.1338619463 - - Protein Z, putative [Ricinus communis]
10 Hb_003060_030 0.1373970391 - - conserved hypothetical protein 16 [Hevea brasiliensis]
11 Hb_021409_090 0.1405617345 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
12 Hb_008066_040 0.1407611472 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
13 Hb_000035_440 0.1416038788 - - -
14 Hb_000111_280 0.1423801962 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
15 Hb_005841_040 0.1425210892 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
16 Hb_007810_030 0.1440371932 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
17 Hb_003043_120 0.144092651 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002876_360 0.1453996909 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
19 Hb_001935_030 0.1462515678 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001862_100 0.1465217456 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_140 Hb_000352_140 Hb_005841_050 Hb_005841_050 Hb_000352_140--Hb_005841_050 Hb_002045_230 Hb_002045_230 Hb_000352_140--Hb_002045_230 Hb_011245_020 Hb_011245_020 Hb_000352_140--Hb_011245_020 Hb_000599_090 Hb_000599_090 Hb_000352_140--Hb_000599_090 Hb_000106_090 Hb_000106_090 Hb_000352_140--Hb_000106_090 Hb_000184_220 Hb_000184_220 Hb_000352_140--Hb_000184_220 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_146225_010 Hb_146225_010 Hb_005841_050--Hb_146225_010 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_006831_030 Hb_006831_030 Hb_011245_020--Hb_006831_030 Hb_000367_280 Hb_000367_280 Hb_011245_020--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_011245_020--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_011245_020--Hb_007810_030 Hb_011245_020--Hb_017862_010 Hb_009252_130 Hb_009252_130 Hb_000599_090--Hb_009252_130 Hb_000563_590 Hb_000563_590 Hb_000599_090--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_000599_090--Hb_001621_180 Hb_000061_480 Hb_000061_480 Hb_000599_090--Hb_000061_480 Hb_000111_280 Hb_000111_280 Hb_000599_090--Hb_000111_280 Hb_000531_020 Hb_000531_020 Hb_000599_090--Hb_000531_020 Hb_000106_090--Hb_002326_180 Hb_000106_090--Hb_002045_230 Hb_006132_050 Hb_006132_050 Hb_000106_090--Hb_006132_050 Hb_002876_360 Hb_002876_360 Hb_000106_090--Hb_002876_360 Hb_000106_090--Hb_000599_090 Hb_000184_220--Hb_002045_230 Hb_000184_220--Hb_021409_090 Hb_000364_210 Hb_000364_210 Hb_000184_220--Hb_000364_210 Hb_000184_220--Hb_005841_050 Hb_000123_160 Hb_000123_160 Hb_000184_220--Hb_000123_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05147 0.633284 0.323755 1.29127 4.3927 7.73336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.06361 23.6996 14.6717 1.61169 1.29689

CAGE analysis