Hb_000599_090

Information

Type -
Description -
Location Contig599: 66234-68347
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_006386227.1
description hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GPC7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s039001g PE=4 SV=1
Gene Ontology
ID GO:0008233
description mitochondrial inner membrane protease subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50442: 66122-69991 , PASA_asmbl_50443: 66216-67069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_090 0.0 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
2 Hb_009252_130 0.094410441 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
3 Hb_000563_590 0.0990884203 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
4 Hb_001621_180 0.1043841832 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
5 Hb_000061_480 0.1100996103 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
6 Hb_000111_280 0.1115557653 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_000531_020 0.1138256152 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
8 Hb_000352_140 0.1175906174 - - -
9 Hb_000085_200 0.1178877285 - - ATP synthase subunit H protein [Hevea brasiliensis]
10 Hb_034585_040 0.1191404224 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
11 Hb_003216_100 0.1197212792 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
12 Hb_001104_120 0.1211386963 - - -
13 Hb_000617_050 0.1218374911 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
14 Hb_007021_020 0.1229783417 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
15 Hb_000061_160 0.1235622893 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
16 Hb_183963_020 0.1236424687 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
17 Hb_000012_450 0.1241980688 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
18 Hb_002326_180 0.1243584975 - - Protein Z, putative [Ricinus communis]
19 Hb_000340_430 0.1248509343 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000106_090 0.125579887 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_090 Hb_000599_090 Hb_009252_130 Hb_009252_130 Hb_000599_090--Hb_009252_130 Hb_000563_590 Hb_000563_590 Hb_000599_090--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_000599_090--Hb_001621_180 Hb_000061_480 Hb_000061_480 Hb_000599_090--Hb_000061_480 Hb_000111_280 Hb_000111_280 Hb_000599_090--Hb_000111_280 Hb_000531_020 Hb_000531_020 Hb_000599_090--Hb_000531_020 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_009252_130--Hb_000563_590 Hb_009252_130--Hb_000061_480 Hb_009252_130--Hb_001621_180 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120 Hb_000061_480--Hb_000190_060 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000703_140 Hb_000703_140 Hb_000061_480--Hb_000703_140 Hb_001214_030 Hb_001214_030 Hb_000061_480--Hb_001214_030 Hb_000061_480--Hb_000531_020 Hb_000648_060 Hb_000648_060 Hb_000111_280--Hb_000648_060 Hb_000111_280--Hb_183963_020 Hb_005694_080 Hb_005694_080 Hb_000111_280--Hb_005694_080 Hb_007021_020 Hb_007021_020 Hb_000111_280--Hb_007021_020 Hb_000111_280--Hb_009252_130 Hb_000567_170 Hb_000567_170 Hb_000111_280--Hb_000567_170 Hb_000025_530 Hb_000025_530 Hb_000531_020--Hb_000025_530 Hb_000260_080 Hb_000260_080 Hb_000531_020--Hb_000260_080 Hb_000883_050 Hb_000883_050 Hb_000531_020--Hb_000883_050 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9835 2.01622 0.937727 2.92045 11.8696 14.794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7458 37.762 18.7305 3.64432 1.24213

CAGE analysis