Hb_005694_080

Information

Type -
Description -
Location Contig5694: 57159-59386
Sequence    

Annotation

kegg
ID rcu:RCOM_0700890
description DNA-directed RNA polymerase III, putative
nr
ID XP_002523512.1
description DNA-directed RNA polymerase III, putative [Ricinus communis]
swissprot
ID Q9Y2Y1
description DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2
trembl
ID B9SBZ2
description DNA-directed RNA polymerase subunit OS=Ricinus communis GN=RCOM_0700890 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dna-directed rna polymerase iii subunit rpc10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49235: 57287-59274 , PASA_asmbl_49236: 57301-59274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_080 0.0 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
2 Hb_007101_130 0.0839605086 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000030_100 0.0860913606 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
4 Hb_000883_050 0.0883126439 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
5 Hb_008289_060 0.0934330047 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
6 Hb_000753_130 0.0941678692 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
7 Hb_000648_060 0.0965796578 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
8 Hb_007943_090 0.0998404053 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
9 Hb_000111_280 0.0999496201 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
10 Hb_001109_020 0.100045922 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000089_160 0.1004384342 - - 60S ribosomal protein L5B [Hevea brasiliensis]
12 Hb_027472_180 0.1015935239 - - hypothetical protein L484_016229 [Morus notabilis]
13 Hb_011465_040 0.1017542459 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
14 Hb_005333_130 0.1019041668 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007672_010 0.1020600751 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
16 Hb_004951_040 0.1020687345 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
17 Hb_003216_100 0.1025777283 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
18 Hb_003226_280 0.1051388998 - - PREDICTED: peter Pan-like protein [Populus euphratica]
19 Hb_002918_200 0.1081729937 - - -
20 Hb_000239_010 0.1083291733 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005694_080 Hb_005694_080 Hb_007101_130 Hb_007101_130 Hb_005694_080--Hb_007101_130 Hb_000030_100 Hb_000030_100 Hb_005694_080--Hb_000030_100 Hb_000883_050 Hb_000883_050 Hb_005694_080--Hb_000883_050 Hb_008289_060 Hb_008289_060 Hb_005694_080--Hb_008289_060 Hb_000753_130 Hb_000753_130 Hb_005694_080--Hb_000753_130 Hb_000648_060 Hb_000648_060 Hb_005694_080--Hb_000648_060 Hb_007672_010 Hb_007672_010 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_027472_180 Hb_027472_180 Hb_007101_130--Hb_027472_180 Hb_008453_090 Hb_008453_090 Hb_007101_130--Hb_008453_090 Hb_001184_110 Hb_001184_110 Hb_007101_130--Hb_001184_110 Hb_000376_050 Hb_000376_050 Hb_007101_130--Hb_000376_050 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_000089_160 Hb_000089_160 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000703_140 Hb_000703_140 Hb_000883_050--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000883_050--Hb_000260_080 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_008289_060--Hb_002918_200 Hb_003408_030 Hb_003408_030 Hb_000753_130--Hb_003408_030 Hb_027402_070 Hb_027402_070 Hb_000753_130--Hb_027402_070 Hb_002527_070 Hb_002527_070 Hb_000753_130--Hb_002527_070 Hb_000753_130--Hb_008289_060 Hb_000431_010 Hb_000431_010 Hb_000753_130--Hb_000431_010 Hb_001141_280 Hb_001141_280 Hb_000753_130--Hb_001141_280 Hb_000648_060--Hb_002918_200 Hb_000212_260 Hb_000212_260 Hb_000648_060--Hb_000212_260 Hb_004108_230 Hb_004108_230 Hb_000648_060--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_000648_060--Hb_003175_040 Hb_000648_060--Hb_003927_130 Hb_001538_110 Hb_001538_110 Hb_000648_060--Hb_001538_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.027 8.30248 12.2496 9.03887 42.1648 42.4653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.7455 106.87 87.9523 30.0623 7.47196

CAGE analysis