Hb_000089_160

Information

Type -
Description -
Location Contig89: 171664-175363
Sequence    

Annotation

kegg
ID vvi:100242372
description 60S ribosomal protein L5-like
nr
ID ADR71226.1
description 60S ribosomal protein L5B [Hevea brasiliensis]
swissprot
ID Q6UNT2
description 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1
trembl
ID I3NMI9
description 60S ribosomal protein L5B OS=Hevea brasiliensis GN=RPL5B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61564: 172624-173158 , PASA_asmbl_61565: 171784-173105 , PASA_asmbl_61567: 174287-175027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_160 0.0 - - 60S ribosomal protein L5B [Hevea brasiliensis]
2 Hb_001691_210 0.0540391557 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
3 Hb_001718_100 0.0633125692 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
4 Hb_000086_570 0.0667693573 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_001427_120 0.0674173387 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
6 Hb_000030_100 0.0751142001 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
7 Hb_003175_040 0.0770674677 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
8 Hb_100506_010 0.0777269095 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
9 Hb_003226_280 0.0793759731 - - PREDICTED: peter Pan-like protein [Populus euphratica]
10 Hb_000865_070 0.0813152974 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
11 Hb_002527_070 0.0838889319 - - axonemal dynein light chain, putative [Ricinus communis]
12 Hb_071736_020 0.0850052508 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
13 Hb_000261_460 0.0851148563 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
14 Hb_000671_150 0.0870356752 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
15 Hb_002028_130 0.0881738346 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
16 Hb_021650_030 0.0887002817 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_002078_450 0.0891024264 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_003408_020 0.0891313297 - - hypothetical protein RCOM_0453040 [Ricinus communis]
19 Hb_001881_020 0.0913992936 - - clathrin binding protein, putative [Ricinus communis]
20 Hb_000753_130 0.0915045616 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_160 Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040 Hb_001691_210--Hb_001718_100 Hb_005997_010 Hb_005997_010 Hb_001691_210--Hb_005997_010 Hb_001691_210--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_001718_100--Hb_000086_570 Hb_000086_570--Hb_002078_450 Hb_000086_570--Hb_071736_020 Hb_021650_030 Hb_021650_030 Hb_000086_570--Hb_021650_030 Hb_000086_570--Hb_001427_120 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040 Hb_008289_060 Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_004108_230 Hb_004108_230 Hb_003175_040--Hb_004108_230 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_002918_200 Hb_004837_140 Hb_004837_140 Hb_003175_040--Hb_004837_140 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
934.264 152.165 178.296 283.835 706.161 1115.91
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1560.43 1594.67 1490.76 681.894 140.398

CAGE analysis