Hb_001454_330

Information

Type -
Description -
Location Contig1454: 256797-259028
Sequence    

Annotation

kegg
ID cic:CICLE_v10022870mg
description hypothetical protein
nr
ID XP_012083960.1
description PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
swissprot
ID Q9M9W1
description 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1
trembl
ID A0A067JVA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18892 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l22-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11796: 256647-258060
cDNA
(Sanger)
(ID:Location)		 034_D08.ab1: 256654-258045 , 042_E16.ab1: 256647-258060

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_330 0.0 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
2 Hb_000563_590 0.0508861982 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
3 Hb_000089_130 0.0610227287 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
4 Hb_000417_110 0.0809807593 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
5 Hb_011139_020 0.0812749626 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
6 Hb_001951_110 0.0876617169 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
7 Hb_001804_040 0.0885151162 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000634_050 0.0888703259 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
9 Hb_001019_090 0.092531618 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_000152_430 0.0938958283 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
11 Hb_009026_050 0.0940187858 - - vacuolar ATPase F subunit [Hevea brasiliensis]
12 Hb_001104_120 0.0966353563 - - -
13 Hb_000318_380 0.0968397951 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
14 Hb_024650_050 0.0992277422 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
15 Hb_000483_160 0.1019971803 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
16 Hb_000479_180 0.1024004868 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001584_070 0.1042833267 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012515_010 0.1057452883 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
19 Hb_002234_210 0.1058469593 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
20 Hb_007166_050 0.1059625547 - - -

Gene co-expression network

sample Hb_001454_330 Hb_001454_330 Hb_000563_590 Hb_000563_590 Hb_001454_330--Hb_000563_590 Hb_000089_130 Hb_000089_130 Hb_001454_330--Hb_000089_130 Hb_000417_110 Hb_000417_110 Hb_001454_330--Hb_000417_110 Hb_011139_020 Hb_011139_020 Hb_001454_330--Hb_011139_020 Hb_001951_110 Hb_001951_110 Hb_001454_330--Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_001454_330--Hb_001804_040 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000563_590--Hb_000089_130 Hb_000563_590--Hb_011139_020 Hb_001621_180 Hb_001621_180 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_009026_050 Hb_009026_050 Hb_000089_130--Hb_009026_050 Hb_000089_130--Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_001951_110--Hb_001804_040 Hb_000866_300 Hb_000866_300 Hb_001951_110--Hb_000866_300 Hb_004204_030 Hb_004204_030 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_001804_040--Hb_004204_030 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.783 24.1364 13.1321 11.231 94.8428 142.968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
172.53 223.739 86.069 42.3241 9.41059

CAGE analysis