Hb_000330_170

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig330: 159451-164408
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID XP_012065256.1
description PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
swissprot
ID Q9STE7
description Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1
trembl
ID A0A067L630
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20877 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein at1g59780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_170 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
2 Hb_000603_220 0.1053283177 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
3 Hb_000061_160 0.1107119392 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
4 Hb_002200_120 0.114310856 - - conserved hypothetical protein [Ricinus communis]
5 Hb_033448_010 0.1279911483 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
6 Hb_000777_060 0.1325518316 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000369_090 0.1365373504 - - -
8 Hb_049415_020 0.1403049589 - - -
9 Hb_000563_530 0.1420847061 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
10 Hb_180992_010 0.1479122398 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
11 Hb_001104_120 0.1509663447 - - -
12 Hb_000831_060 0.1520358398 - - 17.5 kd heat shock family protein [Populus trichocarpa]
13 Hb_007317_220 0.1527839959 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
14 Hb_134789_010 0.1564006266 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_115919_020 0.1574269115 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
16 Hb_000032_260 0.161479062 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
17 Hb_005063_010 0.1615862298 - - HEV1.1 [Hevea brasiliensis]
18 Hb_008016_010 0.1621253536 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
19 Hb_004410_010 0.1621425938 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
20 Hb_000252_040 0.1623499898 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]

Gene co-expression network

sample Hb_000330_170 Hb_000330_170 Hb_000603_220 Hb_000603_220 Hb_000330_170--Hb_000603_220 Hb_000061_160 Hb_000061_160 Hb_000330_170--Hb_000061_160 Hb_002200_120 Hb_002200_120 Hb_000330_170--Hb_002200_120 Hb_033448_010 Hb_033448_010 Hb_000330_170--Hb_033448_010 Hb_000777_060 Hb_000777_060 Hb_000330_170--Hb_000777_060 Hb_000369_090 Hb_000369_090 Hb_000330_170--Hb_000369_090 Hb_007317_220 Hb_007317_220 Hb_000603_220--Hb_007317_220 Hb_005063_010 Hb_005063_010 Hb_000603_220--Hb_005063_010 Hb_000603_220--Hb_033448_010 Hb_000603_220--Hb_002200_120 Hb_000603_220--Hb_000369_090 Hb_001104_120 Hb_001104_120 Hb_000061_160--Hb_001104_120 Hb_000061_160--Hb_000777_060 Hb_001621_180 Hb_001621_180 Hb_000061_160--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260 Hb_000184_120 Hb_000184_120 Hb_002200_120--Hb_000184_120 Hb_000563_530 Hb_000563_530 Hb_002200_120--Hb_000563_530 Hb_002200_120--Hb_033448_010 Hb_002200_120--Hb_000369_090 Hb_002200_120--Hb_000061_160 Hb_033448_010--Hb_000563_530 Hb_033448_010--Hb_000369_090 Hb_033448_010--Hb_000184_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100 Hb_000777_060--Hb_001621_180 Hb_000777_060--Hb_002200_120 Hb_007441_180 Hb_007441_180 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_000369_090--Hb_000563_530 Hb_000369_090--Hb_000184_120 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.570191 0 0 0.0693589 0.84179 1.12186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.735538 1.3641 0.663645 0.164687 0

CAGE analysis