Hb_000369_090

Information

Type -
Description -
Location Contig369: 140438-141899
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37999: 140617-141847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_090 0.0 - - -
2 Hb_033448_010 0.1076890148 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
3 Hb_000563_530 0.122550281 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
4 Hb_002200_120 0.1272198114 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000330_170 0.1365373504 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
6 Hb_000184_120 0.1414533256 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
7 Hb_180992_010 0.1455724307 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
8 Hb_000603_220 0.1460047945 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
9 Hb_000777_060 0.1493734661 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000061_160 0.1521164434 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
11 Hb_001104_120 0.1550472821 - - -
12 Hb_005348_080 0.156188614 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
13 Hb_000831_060 0.157818237 - - 17.5 kd heat shock family protein [Populus trichocarpa]
14 Hb_007317_220 0.1590381754 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
15 Hb_000252_040 0.1595344619 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
16 Hb_073973_110 0.1605278889 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
17 Hb_004025_030 0.1621733628 - - -
18 Hb_000366_100 0.1637118176 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
19 Hb_017711_010 0.1642930948 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
20 Hb_007441_180 0.1666801892 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000369_090 Hb_000369_090 Hb_033448_010 Hb_033448_010 Hb_000369_090--Hb_033448_010 Hb_000563_530 Hb_000563_530 Hb_000369_090--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_000369_090--Hb_002200_120 Hb_000330_170 Hb_000330_170 Hb_000369_090--Hb_000330_170 Hb_000184_120 Hb_000184_120 Hb_000369_090--Hb_000184_120 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010 Hb_033448_010--Hb_000563_530 Hb_033448_010--Hb_000184_120 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100 Hb_000563_530--Hb_000184_120 Hb_000563_530--Hb_002200_120 Hb_077562_040 Hb_077562_040 Hb_000563_530--Hb_077562_040 Hb_000563_530--Hb_000366_100 Hb_002200_120--Hb_000184_120 Hb_002200_120--Hb_000330_170 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160 Hb_000603_220 Hb_000603_220 Hb_000330_170--Hb_000603_220 Hb_000330_170--Hb_000061_160 Hb_000330_170--Hb_033448_010 Hb_000777_060 Hb_000777_060 Hb_000330_170--Hb_000777_060 Hb_000184_120--Hb_077562_040 Hb_004025_030 Hb_004025_030 Hb_000184_120--Hb_004025_030 Hb_000329_610 Hb_000329_610 Hb_180992_010--Hb_000329_610 Hb_001220_040 Hb_001220_040 Hb_180992_010--Hb_001220_040 Hb_000933_140 Hb_000933_140 Hb_180992_010--Hb_000933_140 Hb_005348_080 Hb_005348_080 Hb_180992_010--Hb_005348_080 Hb_004295_020 Hb_004295_020 Hb_180992_010--Hb_004295_020 Hb_180992_010--Hb_000061_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35266 0 0.16505 0.0531904 2.39408 3.94745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59437 4.355 1.43471 0.267818 0.176142

CAGE analysis