Hb_002200_120

Information

Type -
Description -
Location Contig2200: 105422-106362
Sequence    

Annotation

kegg
ID rcu:RCOM_0138270
description hypothetical protein
nr
ID XP_002526155.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJI6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0138270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000184_120 0.1061125596 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
3 Hb_000330_170 0.114310856 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
4 Hb_000563_530 0.1144477424 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
5 Hb_033448_010 0.1186098343 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
6 Hb_000369_090 0.1272198114 - - -
7 Hb_000061_160 0.1318791012 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
8 Hb_000777_060 0.1360228302 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000603_220 0.138239062 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
10 Hb_077562_040 0.1444375247 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
11 Hb_004968_060 0.1508437468 - - conserved hypothetical protein [Ricinus communis]
12 Hb_073973_110 0.1550289881 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
13 Hb_180992_010 0.1554591162 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
14 Hb_000366_100 0.1620972684 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
15 Hb_004223_200 0.1655753824 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
16 Hb_000831_060 0.1672767337 - - 17.5 kd heat shock family protein [Populus trichocarpa]
17 Hb_001821_120 0.170016717 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
18 Hb_000621_050 0.1736717612 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
19 Hb_001104_120 0.1737810895 - - -
20 Hb_017711_010 0.1752053361 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]

Gene co-expression network

sample Hb_002200_120 Hb_002200_120 Hb_000184_120 Hb_000184_120 Hb_002200_120--Hb_000184_120 Hb_000330_170 Hb_000330_170 Hb_002200_120--Hb_000330_170 Hb_000563_530 Hb_000563_530 Hb_002200_120--Hb_000563_530 Hb_033448_010 Hb_033448_010 Hb_002200_120--Hb_033448_010 Hb_000369_090 Hb_000369_090 Hb_002200_120--Hb_000369_090 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160 Hb_077562_040 Hb_077562_040 Hb_000184_120--Hb_077562_040 Hb_000184_120--Hb_000563_530 Hb_000184_120--Hb_033448_010 Hb_004025_030 Hb_004025_030 Hb_000184_120--Hb_004025_030 Hb_000184_120--Hb_000369_090 Hb_000603_220 Hb_000603_220 Hb_000330_170--Hb_000603_220 Hb_000330_170--Hb_000061_160 Hb_000330_170--Hb_033448_010 Hb_000777_060 Hb_000777_060 Hb_000330_170--Hb_000777_060 Hb_000330_170--Hb_000369_090 Hb_000563_530--Hb_033448_010 Hb_000563_530--Hb_077562_040 Hb_000563_530--Hb_000369_090 Hb_000366_100 Hb_000366_100 Hb_000563_530--Hb_000366_100 Hb_033448_010--Hb_000369_090 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_033448_010--Hb_000366_100 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010 Hb_001104_120 Hb_001104_120 Hb_000061_160--Hb_001104_120 Hb_000061_160--Hb_000777_060 Hb_001621_180 Hb_001621_180 Hb_000061_160--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24314 0.100828 0.0500941 0.087062 3.0666 4.81363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14184 6.25447 1.61684 0.439688 0

CAGE analysis